pycom02g15000

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003645
Physical Location & Seq
Forward (+)
11715763 .. 11718575
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g15000.3

Sequence Viewer

Length: 669 bp
ATGAGCAAGGGACCTGGACTTTTCATCGACATCGGCAAAAAAGCCAAAGATCTTCTGACCAAGGACTACAGCTCCGATCAGAAATTCACCGTTTCCACCTACAGCGATGCAGGGGTGGCTCTCACCTCAACAGCAGTGAAGAAAGGAGGACTTTCCACTGGGGACATCTTGACACAATACAAGTACAAGAACACAGTGGTTGATGTCAAAGTTGATACAGAATCAAACATCTCGACGACCTTCACGATCAATGAGATTGTCCCATCCACAAAAACTATAGCTTCATTCAAAGCCCCTGATTTCAACTCTGGCAAGTTGGAGGTTCAATACTTCCATGACCATGCAACCTTCACTACAGCTGTTGCCTTGAGTCAATCCCCAGCCATTGATTTTTCAGCCACCATTGGAACCCCAACCATTGCATTTGGTGCAGAAGGGGGTTATGACACTACCTCTGGAAACTTTACGAAGTATACTGCTGGAATTAGTATCACAAAGCCTGATCAGTCTGCTTCAATAATTTTGGGCGACAAGGGAGACAGTATAAGAGCATCTTATGTGCATTATATGGATTTGTTGAAGAGGAGTGCTGCTGTGGGAGAGATCACAAGAGCACAAGTTCTCCACGAACGAGAACACTTTCACGGTGGGAGGACAATATGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

223

Amino Acids

23.8

Weight (kDa)

7.01

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 473
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 5 cut(s) 289, 304, 326, 516, 580
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 3 cut(s) 72, 281, 359
AluI AGCT 3 cut(s) 72, 281, 359
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 79, 115
AvaII GGWCC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 577
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 531
BfmI CTRYAG 4 cut(s) 67, 100, 276, 354
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 12, 409
BmrFI CCNGG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 97, 560
BmuI ACTGGG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 606, 636
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 598
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 616
BslFI GGGAC 3 cut(s) 24, 176, 245
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 3 cut(s) 24, 176, 245
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 5 cut(s) 49, 76, 246, 502, 603
BspLI GGNNCC 2 cut(s) 12, 409
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 5 cut(s) 49, 76, 246, 502, 603
BssNAI GTATAC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 4 cut(s) 91, 196, 542, 647
Bst6I CTCTTC 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 428
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 5 cut(s) 52, 79, 249, 505, 606
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 5 cut(s) 49, 76, 246, 502, 603
BstMWI GCNNNNNNNGC 2 cut(s) 116, 428
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 4 cut(s) 67, 100, 276, 354
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BstZ17I GTATAC 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 263
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 3 cut(s) 141, 156, 201
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 335, 341
CviJI RGCY 9 cut(s) 44, 72, 119, 281, 293, 359, 383, 398, 499
CviKI_1 RGCY 9 cut(s) 44, 72, 119, 281, 293, 359, 383, 398, 499
CviQI GTAC 1 cut(s) 184
DpnI GATC 5 cut(s) 51, 78, 248, 504, 605
DpnII GATC 5 cut(s) 49, 76, 246, 502, 603
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 338, 344
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 538, 570
FaqI GGGAC 3 cut(s) 24, 176, 245
FatI CATG 2 cut(s) 334, 340
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 1 cut(s) 591
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 591
GluI GCNGC 1 cut(s) 591
GsaI CCCAGC 1 cut(s) 383
Hin1II CATG 2 cut(s) 338, 344
HinfI GANTC 2 cut(s) 221, 370
HphI GGTGA 2 cut(s) 79, 115
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 57, 76, 81
Hpy188III TCNNGA 4 cut(s) 169, 232, 244, 456
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 250, 358, 428
HpyCH4III ACNGT 4 cut(s) 91, 196, 542, 647
HpyCH4V TGCA 5 cut(s) 110, 344, 422, 431, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 428
Hsp92II CATG 2 cut(s) 338, 344
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 49, 76, 246, 502, 603
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 27, 96, 144, 294, 309, 393, 441, 465, 513
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 2 cut(s) 97, 560
MalI GATC 5 cut(s) 51, 78, 248, 504, 605
MboI GATC 5 cut(s) 49, 76, 246, 502, 603
MboII GAAGA 3 cut(s) 44, 151, 592
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 3 cut(s) 83, 483, 519
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 6 cut(s) 136, 140, 313, 463, 576, 645
MroXI GAANNNNTTC 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 116, 428
NdeII GATC 5 cut(s) 49, 76, 246, 502, 603
NlaIII CATG 2 cut(s) 338, 344
NlaIV GGNNCC 2 cut(s) 12, 409
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 592
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 12, 409
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 5 cut(s) 49, 76, 246, 502, 603
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 2 cut(s) 97, 560
SfcI CTRYAG 4 cut(s) 67, 100, 276, 354
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 3 cut(s) 83, 483, 519
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 4 cut(s) 91, 196, 542, 647
TaqI TCGA 2 cut(s) 27, 233
TasI AATT 3 cut(s) 83, 483, 519
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 3 cut(s) 141, 163, 201
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 13, 273
TspRI CASTG 3 cut(s) 141, 163, 201
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.