Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001484.1

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

130258 .. 132426

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001484.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgagcaagggacctggactcttctccgacatcggcaaaaaggccaaagatcttctgaccagggactacaactccgatcagaaattcagtgtctcctcctacagcgatgccggtgtggctctcacatcaacagcagtgaaaaaaggaggactgtccaccggggacattgctacacagtacaagtacaagaacgcagtcgttgatgtcaaagttgacacagaatcaaatatctcaactaccttcacaatcacagatattgttccatccacaaagactattgcttcattcaaagtgccagactataacggtggcaagttggaggttcagtactttcatgaccatgcaaccttaactacagctgttgctttgaatcaatccccagccattgatttttcagctaccattggtaccccaaccattgcatttggtgcagaagctggttatgacaccacttctggaaattttacaaagtacactgctggaattagcgtgacacaatcggtttccaatgcttcaataattctgggcgacaagggagacagtataaaagcatcttatgtgcattatgtggatctgttgaagaggagtgctgctgttggagaaatcactagaaagttttccacgaacgagaacactttcacagtgggaggccaatatgctattgatcccttgactgtagtgaaaacaaagctcaacaatcacggcaagctgggagccctcctgcagcatgaagtgataccaaagtctctgctgacagtatctggtgagattgacaccaagtccttggacaaacatcccaaattcgggctggccattgccctcaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

276

Amino Acids

29.3

Weight (kDa)

8.76

Isoelectric Point (pI)

16.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AclWI	GGATC	2 cut(s)	579, 659
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	3 cut(s)	83, 460, 800
AfaI	GTAC	5 cut(s)	179, 185, 329, 409, 473
AfiI	CCNNNNNNNGG	2 cut(s)	803, 804
AgsI	TTSAA	4 cut(s)	289, 370, 516, 580
AhdI	GACNNNNNGTC	1 cut(s)	778
AjnI	CCWGG	2 cut(s)	13, 59
AluBI	AGCT	5 cut(s)	359, 398, 437, 691, 709
AluI	AGCT	5 cut(s)	359, 398, 437, 691, 709
Alw26I	GTCTC	3 cut(s)	97, 531, 750
AlwI	GGATC	2 cut(s)	579, 659
AlwNI	CAGNNNCTG	2 cut(s)	437, 761
AoxI	GGCC	3 cut(s)	42, 649, 810
ApeKI	GCWGC	2 cut(s)	590, 724
ApoI	RAATTY	3 cut(s)	83, 460, 800
Asp700I	GAANNNNTTC	2 cut(s)	616, 635
Asp718I	GGTACC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	776
AvaII	GGWCC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	728, 761
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	577, 736
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	2 cut(s)	15, 61
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	97, 531, 750
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	4 cut(s)	100, 354, 675, 722
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	2 cut(s)	591, 725
BlsI	GCNGC	2 cut(s)	592, 726
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	15, 61, 160
Bme18I	GGWCC	1 cut(s)	11
BmeRI	GACNNNNNGTC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	3 cut(s)	12, 409, 715
BmrFI	CCNGG	3 cut(s)	15, 61, 160
BmsI	GCATC	2 cut(s)	97, 560
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	60, 159, 783
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	803, 804
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	3 cut(s)	165, 417, 813
BseBI	CCWGG	2 cut(s)	15, 61
BseDI	CCNNGG	3 cut(s)	60, 159, 783
BseGI	GGATG	2 cut(s)	263, 793
BseLI	CCNNNNNNNGG	2 cut(s)	803, 804
BseMI	GCAATG	3 cut(s)	165, 417, 813
BseRI	GAGGAG	2 cut(s)	85, 598
BseXI	GCAGC	2 cut(s)	577, 736
BseYI	CCCAGC	2 cut(s)	379, 709
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	44, 651, 812
BshNI	GGYRCC	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	111, 159
BslFI	GGGAC	3 cut(s)	24, 77, 176
BslI	CCNNNNNNNGG	2 cut(s)	803, 804
BsmAI	GTCTC	3 cut(s)	97, 531, 750
BsmFI	GGGAC	3 cut(s)	24, 77, 176
BsnI	GGCC	3 cut(s)	44, 651, 812
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	4 cut(s)	49, 76, 571, 664
BspANI	GGCC	3 cut(s)	44, 651, 812
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	12, 409, 715
BspMAI	CTGCAG	1 cut(s)	726
BspPI	GGATC	2 cut(s)	579, 659
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	3 cut(s)	165, 417, 813
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	60, 159, 783
BssMI	GATC	4 cut(s)	49, 76, 571, 664
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	15, 61
Bst4CI	ACNGT	7 cut(s)	153, 177, 308, 542, 643, 676, 757
Bst6I	CTCTTC	2 cut(s)	26, 575
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	707, 810
BstF5I	GGATG	2 cut(s)	263, 793
BstKTI	GATC	4 cut(s)	52, 79, 574, 667
BstMAI	GTCTC	3 cut(s)	97, 531, 750
BstMBI	GATC	4 cut(s)	49, 76, 571, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 428
BstNI	CCWGG	2 cut(s)	15, 61
BstSCI	CCNGG	3 cut(s)	13, 59, 158
BstSFI	CTRYAG	4 cut(s)	100, 354, 675, 722
BstV1I	GCAGC	2 cut(s)	577, 736
BstX2I	RGATCY	2 cut(s)	49, 571
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	2 cut(s)	49, 571
BsuRI	GGCC	3 cut(s)	44, 651, 812
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	263, 793
BtsI	GCAGTG	2 cut(s)	141, 474
BtsIMutI	CAGTG	4 cut(s)	94, 141, 474, 648
Cac8I	GCNNGC	2 cut(s)	707, 810
CaiI	CAGNNNCTG	2 cut(s)	437, 761
CciI	TCATGA	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	5 cut(s)	178, 184, 328, 408, 472
CviAII	CATG	3 cut(s)	335, 341, 728
CviQI	GTAC	5 cut(s)	178, 184, 328, 408, 472
DpnI	GATC	4 cut(s)	51, 78, 573, 666
DpnII	GATC	4 cut(s)	49, 76, 571, 664
DriI	GACNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	2 cut(s)	26, 575
Eam1105I	GACNNNNNGTC	1 cut(s)	778
EarI	CTCTTC	2 cut(s)	26, 575
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	13, 59
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	338, 344, 731
FaiI	YATR	9 cut(s)	303, 336, 342, 444, 545, 558, 567, 657, 729
FaqI	GGGAC	3 cut(s)	24, 77, 176
FatI	CATG	3 cut(s)	334, 340, 727
Fnu4HI	GCNGC	2 cut(s)	591, 725
FokI	GGATG	2 cut(s)	250, 780
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	591, 725
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	2 cut(s)	591, 725
GsaI	CCCAGC	2 cut(s)	383, 713
HaeIII	GGCC	3 cut(s)	44, 651, 812
HapII	CCGG	2 cut(s)	111, 159
Hin1II	CATG	3 cut(s)	338, 344, 731
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	18, 221, 370
HpaII	CCGG	2 cut(s)	111, 159
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	3 cut(s)	156, 214, 474
Hpy188I	TCNGA	4 cut(s)	28, 57, 76, 81
Hpy188III	TCNNGA	2 cut(s)	335, 456
Hpy8I	GTNNAC	3 cut(s)	156, 214, 474
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	7 cut(s)	153, 177, 308, 542, 643, 676, 757
HpyCH4V	TGCA	5 cut(s)	344, 422, 431, 562, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 428
Hsp92II	CATG	3 cut(s)	338, 344, 731
KpnI	GGTACC	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	49, 76, 571, 664
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	2 cut(s)	577, 736
LweI	GCATC	2 cut(s)	97, 560
MaeI	CTAG	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	51, 78, 573, 666
MboI	GATC	4 cut(s)	49, 76, 571, 664
MboII	GAAGA	3 cut(s)	13, 44, 592
MflI	RGATCY	2 cut(s)	49, 571
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	5 cut(s)	83, 460, 483, 519, 800
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	3 cut(s)	51, 297, 577
MnlI	CCTC	7 cut(s)	106, 140, 313, 576, 641, 728, 830
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	2 cut(s)	616, 635
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	111, 159
MspR9I	CCNGG	3 cut(s)	15, 61, 160
MvaI	CCWGG	2 cut(s)	15, 61
MwoI	GCNNNNNNNGC	2 cut(s)	116, 428
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	49, 76, 571, 664
NlaIII	CATG	3 cut(s)	338, 344, 731
NlaIV	GGNNCC	3 cut(s)	12, 409, 715
NmuCI	GTSAC	1 cut(s)	490
PagI	TCATGA	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	616, 635
PfeI	GAWTC	2 cut(s)	221, 370
PkrI	GCNGC	2 cut(s)	592, 726
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	13, 59
PspFI	CCCAGC	2 cut(s)	379, 709
PspGI	CCWGG	2 cut(s)	13, 59
PspN4I	GGNNCC	3 cut(s)	12, 409, 715
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	726
PstNI	CAGNNNCTG	2 cut(s)	437, 761
PsuI	RGATCY	2 cut(s)	49, 571
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	5 cut(s)	179, 185, 329, 409, 473
RsaNI	GTAC	5 cut(s)	178, 184, 328, 408, 472
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	591, 725
Sau3AI	GATC	4 cut(s)	49, 76, 571, 664
Sau96I	GGNCC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	15, 61, 160
SduI	GDGCHC	1 cut(s)	718
SetI	ASST	9 cut(s)	16, 242, 324, 350, 361, 400, 439, 693, 711
SfaNI	GCATC	2 cut(s)	97, 560
SfcI	CTRYAG	4 cut(s)	100, 354, 675, 722
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	83, 460, 483, 519, 800
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	13, 59, 158
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	7 cut(s)	153, 177, 308, 542, 643, 676, 757
TasI	AATT	5 cut(s)	83, 460, 483, 519, 800
TatI	WGTACW	4 cut(s)	177, 183, 327, 471
TfiI	GAWTC	2 cut(s)	221, 370
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	4 cut(s)	94, 141, 481, 648
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	590, 724
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	273, 323, 744
TspRI	CASTG	4 cut(s)	94, 141, 481, 648
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	83, 460, 800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	616, 635
XspI	CTAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.