Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

22691431 .. 22694542

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGCAAGGGACCTGGACTTTTCTCCGACATCGGCAAAAAAGCCAAAGATCTTCTAACGAAGGACTACAACTCCGATCAGAAGTTCACCGTCTCCACCTACAGCGATGCCGGTGTGGCCCTCACGTCAACAGCGGTGAAGAAAGGAGGACTTTCCACTGGGGACATCGTGACACAATACAAGTACAAGAACACTGTGGTTGATGTCAAAGTTGACACAGAATCAAATATCTCAACAACCTTCACGATCAATGAGATTGTCCCATCAACAAAGACTATTGCTTCATTCAAAATACCTGATCATAACTCTGGCAAGTTGGAGGTTCAGTACTTCCATGACCATGCAACCTTCACTACAGCCGTTGCCTTGAATCAATCACCAGCCATTGATTTTTCAGCCACAATTGGTACCCCAACCATTGCATTTGGTGCAGAAGGGGGTTATGACACTACTTCTGGAAACTTTACAAAGTACACTGCTGGAATTAGCGTGAACAAACCAGACCAGTCTGCTTCAATAATTCTGGGTGACAAGGGAGACAGTATAAGAGCATCTTATGTGCATTTTCTGGATGTGTTGAAGAGGACTGCTACTGTGGGAGAGATCACTAGAAAGTTTTCCACAAACGAGAACACTTTCACAGTGGGAGGGTCATATGCTATTGATCTTCTGACTGTAGTGAAAGCTAAGCTCAACAATCATGGAAAGCTGGGGGCCCTCCTGCAGCATGAGGTCATACCAAAGTCGTTGGTGACAATATCTGGGGAGATCGACACCAAGGCCCTGGACAAAAATCCCAGGTTTGGAGTGGCCATTGCCCTCAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.45

Weight (kDa)

8.79

Isoelectric Point (pI)

14.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	810
AfaI	GTAC	4 cut(s)	185, 329, 409, 473
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	4 cut(s)	289, 370, 516, 580
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	3 cut(s)	13, 783, 797
AluBI	AGCT	3 cut(s)	686, 691, 709
AluI	AGCT	3 cut(s)	686, 691, 709
Alw26I	GTCTC	2 cut(s)	97, 531
AoxI	GGCC	4 cut(s)	117, 714, 780, 810
ApaI	GGGCCC	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	724
Asp700I	GAANNNNTTC	2 cut(s)	616, 635
Asp718I	GGTACC	1 cut(s)	407
AspS9I	GGNCC	5 cut(s)	11, 118, 714, 715, 781
AsuHPI	GGTGA	5 cut(s)	79, 148, 369, 539, 763
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	718
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	344, 811
BciT130I	CCWGG	3 cut(s)	15, 785, 799
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	97, 531
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	4 cut(s)	100, 354, 675, 722
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	725
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	726
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	15, 785, 799
Bme18I	GGWCC	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	5 cut(s)	11, 118, 714, 715, 781
BmiI	GGNNCC	4 cut(s)	12, 409, 715, 716
BmrFI	CCNGG	3 cut(s)	15, 785, 799
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	97, 560
BmuI	ACTGGG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	777, 783, 797
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	163, 505
Bse3DI	GCAATG	2 cut(s)	417, 813
BseBI	CCWGG	3 cut(s)	15, 785, 799
BseDI	CCNNGG	3 cut(s)	777, 783, 797
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMI	GCAATG	2 cut(s)	417, 813
BseNI	ACTGG	2 cut(s)	163, 505
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	736
BseYI	CCCAGC	1 cut(s)	709
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	4 cut(s)	119, 716, 782, 812
BshNI	GGYRCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	3 cut(s)	24, 176, 245
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	2 cut(s)	97, 531
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	3 cut(s)	24, 176, 245
BsnI	GGCC	4 cut(s)	119, 716, 782, 812
Bsp120I	GGGCCC	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	4 cut(s)	119, 716, 782, 812
BspLI	GGNNCC	4 cut(s)	12, 409, 715, 716
BspMAI	CTGCAG	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	2 cut(s)	417, 813
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	163, 505
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	777, 783, 797
BssMI	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	15, 785, 799
Bst4CI	ACNGT	6 cut(s)	91, 196, 542, 595, 643, 676
Bst6I	CTCTTC	1 cut(s)	575
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	7 cut(s)	52, 79, 249, 301, 606, 667, 771
BstMAI	GTCTC	2 cut(s)	97, 531
BstMBI	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 428
BstNI	CCWGG	3 cut(s)	15, 785, 799
BstSCI	CCNGG	3 cut(s)	13, 783, 797
BstSFI	CTRYAG	4 cut(s)	100, 354, 675, 722
BstSLI	GKGCMC	1 cut(s)	718
BstV1I	GCAGC	1 cut(s)	736
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	119, 716, 782, 812
BtgZI	GCGATG	1 cut(s)	120
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	577
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	4 cut(s)	156, 192, 474, 648
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	5 cut(s)	11, 118, 714, 715, 781
Csp6I	GTAC	4 cut(s)	184, 328, 408, 472
CviAII	CATG	4 cut(s)	335, 341, 701, 728
CviQI	GTAC	4 cut(s)	184, 328, 408, 472
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	7 cut(s)	51, 78, 248, 300, 605, 666, 770
DpnII	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
EaeI	YGGCCR	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	11
EcoO109I	RGGNCCY	4 cut(s)	11, 714, 715, 781
EcoRII	CCWGG	3 cut(s)	13, 783, 797
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	777
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	4 cut(s)	338, 344, 704, 731
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 538, 570
FaqI	GGGAC	3 cut(s)	24, 176, 245
FatI	CATG	4 cut(s)	334, 340, 700, 727
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	725
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	1 cut(s)	725
GsaI	CCCAGC	1 cut(s)	713
HaeIII	GGCC	4 cut(s)	119, 716, 782, 812
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	4 cut(s)	338, 344, 704, 731
HincII	GTYRAC	2 cut(s)	129, 214
HindII	GTYRAC	2 cut(s)	129, 214
HinfI	GANTC	2 cut(s)	221, 370
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	5 cut(s)	79, 148, 369, 539, 763
Hpy166II	GTNNAC	5 cut(s)	87, 129, 214, 474, 493
Hpy188I	TCNGA	4 cut(s)	28, 76, 81, 672
Hpy188III	TCNNGA	4 cut(s)	169, 244, 456, 569
Hpy8I	GTNNAC	5 cut(s)	87, 129, 214, 474, 493
HpyAV	CCTTC	4 cut(s)	55, 250, 358, 428
HpyCH4III	ACNGT	6 cut(s)	91, 196, 542, 595, 643, 676
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	344, 422, 431, 562, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 428
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	338, 344, 704, 731
KpnI	GGTACC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
Lsp1109I	GCAGC	1 cut(s)	736
LweI	GCATC	2 cut(s)	97, 560
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	3 cut(s)	169, 527, 751
MalI	GATC	7 cut(s)	51, 78, 248, 300, 605, 666, 770
MboI	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
MboII	GAAGA	4 cut(s)	44, 151, 592, 659
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	3 cut(s)	402, 483, 519
MluNI	TGGCCA	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	51, 297
MnlI	CCTC	8 cut(s)	131, 140, 313, 576, 641, 724, 728, 830
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	2 cut(s)	616, 635
MscI	TGGCCA	1 cut(s)	812
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	15, 785, 799
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	3 cut(s)	15, 785, 799
MwoI	GCNNNNNNNGC	2 cut(s)	116, 428
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
NlaIII	CATG	4 cut(s)	338, 344, 704, 731
NlaIV	GGNNCC	4 cut(s)	12, 409, 715, 716
NmuCI	GTSAC	3 cut(s)	169, 527, 751
PdmI	GAANNNNTTC	2 cut(s)	616, 635
PfeI	GAWTC	2 cut(s)	221, 370
PkrI	GCNGC	1 cut(s)	726
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	13, 783, 797
PspFI	CCCAGC	1 cut(s)	709
PspGI	CCWGG	3 cut(s)	13, 783, 797
PspN4I	GGNNCC	4 cut(s)	12, 409, 715, 716
PspOMI	GGGCCC	1 cut(s)	714
PspPI	GGNCC	5 cut(s)	11, 118, 714, 715, 781
PspPPI	RGGWCCY	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	726
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	4 cut(s)	185, 329, 409, 473
RsaNI	GTAC	4 cut(s)	184, 328, 408, 472
RseI	CAYNNNNRTG	1 cut(s)	339
SatI	GCNGC	1 cut(s)	725
Sau3AI	GATC	7 cut(s)	49, 76, 246, 298, 603, 664, 768
Sau96I	GGNCC	5 cut(s)	11, 118, 714, 715, 781
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	15, 785, 799
SduI	GDGCHC	1 cut(s)	718
SfaNI	GCATC	2 cut(s)	97, 560
SfcI	CTRYAG	4 cut(s)	100, 354, 675, 722
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	3 cut(s)	402, 483, 519
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	13, 783, 797
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	6 cut(s)	91, 196, 542, 595, 643, 676
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	771
TasI	AATT	3 cut(s)	402, 483, 519
TatI	WGTACW	3 cut(s)	183, 327, 471
TfiI	GAWTC	2 cut(s)	221, 370
TscAI	CASTG	4 cut(s)	163, 199, 481, 648
TseFI	GTSAC	3 cut(s)	169, 527, 751
TseI	GCWGC	1 cut(s)	724
Tsp45I	GTSAC	3 cut(s)	169, 527, 751
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	4 cut(s)	163, 199, 481, 648
VpaK11BI	GGWCC	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	616, 635
XspI	CTAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.