Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

36497301 .. 36499564

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G423200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCGACCAAAGGCCCTGCTCTCTTCTCGAACATTGGCAAGAAAGCCACAGACTTGCTTAACAAGGACTATAGCACTGACCAGAAGATCAACATCACCACTAACACTGAGACTGGAGTTACCCTCAACTCTGGTTTGGTGAAGAAAGGAGGTCTCTCTTGTGGGGATGTAGCAGCACAATACAAATACAAGAACGCTGCACTTAATGTCAAAGCTGATACAGAATCAAATGTCTCAACAATGCTTACGATCACAGACATCCTGCCTTCTACAAAAACCATTGCTTCAGTAAAACTCCCTGATTACAAATCTGGCAAGTTGGAAGTACAGTATCTTCATGAACATGCATCTTTTACAACAGCTGTTGGTCTGAACGGTTCCCCTGCTGTTGACGTTTCGGCAACCCTTGGTACCCCTAGCATTGCTTTTGGAGCAGAAGCTAGTTACTTGACAAGTTCCAGAGTGTTTGCAAAGTATAATGCTGGCGTCAGCTTGACAAAACAAAATTCCTCTGCTTCAGTAATTCTGGCTGACAAAGGAGACTCGCTAAGGGGGTCGTACTTGCATCATCTAAGTAAGCTGAATGGAGGAGCTGTTGTGGGAGAGGTAAACAGAAGGTTCTCCACAAATGAGAACACATTGACAGTGGGATGTTCATATGTGGTTGACCCTGAAACTGTGGTGAAGGCAAGGCTCAACAACCATGGCAATCTTGGGGCTCTTTTACAGCACCAGCTCACCCCAAAATCTTCTTTAACAATCTGCGGTGCCTTTGACACCAAGGCGTTAGAGAAGAACCCGAAGTTTGGCTTGGCACTCTCCCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

278

Amino Acids

29.19

Weight (kDa)

9.26

Isoelectric Point (pI)

21.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	410, 767
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	270, 501
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	3 cut(s)	327, 412, 560
AfiI	CCNNNNNNNGG	1 cut(s)	806
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	7 cut(s)	215, 362, 440, 492, 580, 593, 736
AluI	AGCT	7 cut(s)	215, 362, 440, 492, 580, 593, 736
Alw26I	GTCTC	4 cut(s)	104, 158, 238, 534
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	173, 197
ApoI	RAATTY	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	88, 151, 694, 730
BanI	GGYRCC	2 cut(s)	410, 767
BanII	GRGCYC	1 cut(s)	721
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbvI	GCAGC	2 cut(s)	184, 185
BcoDI	GTCTC	4 cut(s)	104, 158, 238, 534
BfaI	CTAG	2 cut(s)	417, 441
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	174, 198
BlsI	GCNGC	2 cut(s)	175, 199
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	379, 412, 769
BmsI	GCATC	2 cut(s)	356, 574
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	406, 703, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	579, 582, 609, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	279, 420
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	406, 703, 780
BseGI	GGATG	3 cut(s)	172, 258, 656
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	2 cut(s)	279, 420
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	184, 185
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	15
BshNI	GGYRCC	2 cut(s)	410, 767
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	4 cut(s)	104, 158, 238, 534
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	2 cut(s)	87, 249
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	379, 412, 769
BspT107I	GGYRCC	2 cut(s)	410, 767
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	279, 420
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	406, 703, 780
BssMI	GATC	2 cut(s)	87, 249
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	3 cut(s)	406, 703, 780
Bst4CI	ACNGT	4 cut(s)	330, 377, 646, 679
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	108, 548, 572
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	3 cut(s)	172, 258, 656
BstKTI	GATC	2 cut(s)	90, 252
BstMAI	GTCTC	4 cut(s)	104, 158, 238, 534
BstMBI	GATC	2 cut(s)	87, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	184, 185
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	172, 258, 656
BtsIMutI	CAGTG	3 cut(s)	75, 105, 651
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	326, 411, 559
CviAII	CATG	3 cut(s)	338, 344, 704
CviQI	GTAC	3 cut(s)	326, 411, 559
DdeI	CTNAG	3 cut(s)	108, 548, 572
DpnI	GATC	2 cut(s)	89, 251
DpnII	GATC	2 cut(s)	87, 249
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	406, 703, 780
Eco24I	GRGCYC	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	270, 501
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	3 cut(s)	406, 703, 780
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	3 cut(s)	406, 703, 780
FaeI	CATG	3 cut(s)	341, 347, 707
FaiI	YATR	7 cut(s)	72, 339, 345, 477, 658, 660, 705
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FatI	CATG	3 cut(s)	337, 343, 703
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	174, 198
FokI	GGATG	3 cut(s)	179, 245, 663
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	2 cut(s)	174, 198
FspBI	CTAG	2 cut(s)	417, 441
GluI	GCNGC	2 cut(s)	174, 198
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	341, 347, 707
HincII	GTYRAC	3 cut(s)	6, 391, 667
HindII	GTYRAC	3 cut(s)	6, 391, 667
HinfI	GANTC	2 cut(s)	224, 542
HphI	GGTGA	4 cut(s)	88, 151, 694, 730
Hpy166II	GTNNAC	4 cut(s)	6, 391, 610, 667
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	28, 338, 459
Hpy8I	GTNNAC	4 cut(s)	6, 391, 610, 667
HpyAV	CCTTC	3 cut(s)	276, 609, 679
HpyCH4III	ACNGT	4 cut(s)	330, 377, 646, 679
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	200, 347, 470, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	108, 548, 572
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	341, 347, 707
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	87, 249
LmnI	GCTCC	2 cut(s)	431, 590
Lsp1109I	GCAGC	2 cut(s)	184, 185
LweI	GCATC	2 cut(s)	356, 574
MaeI	CTAG	2 cut(s)	417, 441
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	118, 443
MalI	GATC	2 cut(s)	89, 251
MboI	GATC	2 cut(s)	87, 249
MboII	GAAGA	6 cut(s)	16, 97, 154, 326, 741, 805
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	2 cut(s)	505, 522
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	134, 143, 520, 581, 598, 833
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	3 cut(s)	60, 204, 755
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	2 cut(s)	87, 249
NlaIII	CATG	3 cut(s)	341, 347, 707
NlaIV	GGNNCC	3 cut(s)	379, 412, 769
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	175, 199
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	379, 412, 769
PspPI	GGNCC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	327, 412, 560
RsaNI	GTAC	3 cut(s)	326, 411, 559
RseI	CAYNNNNRTG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	60, 204, 755
SatI	GCNGC	2 cut(s)	174, 198
Sau3AI	GATC	2 cut(s)	87, 249
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	2 cut(s)	356, 574
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	2 cut(s)	505, 522
SsiI	CCGC	1 cut(s)	765
SspMI	CTAG	2 cut(s)	417, 441
StyI	CCWWGG	3 cut(s)	406, 703, 780
TaaI	ACNGT	4 cut(s)	330, 377, 646, 679
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	5, 29
TasI	AATT	2 cut(s)	505, 522
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	60, 204, 755
Tru9I	TTAA	3 cut(s)	60, 204, 755
TscAI	CASTG	3 cut(s)	82, 112, 651
TseI	GCWGC	2 cut(s)	173, 197
TspDTI	ATGAA	3 cut(s)	326, 354, 645
TspRI	CASTG	3 cut(s)	82, 112, 651
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	417, 441
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.