Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

4060952 .. 4062872

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCGACCAGAGGCCCTGCCCTCTTCTCCGCCATTGGCAAGAAAGCCACAGACTTGCTTAACAAGGACTACAACACTGACCAGAAGATAAACATTACCACCTACACTGAAACTGGACTTGCCCTCAACTCGGGTTTGGCTAATAAGGGAGGTCTGTCTTCTGGGGATATGGCAGCACAATACAATTACAAGAATGTCGCGCTCGATTTCAAAGCTGATACACAATCAAATGTCTCGACAGTGCTCGCTGTCACTGACATCTTGCCTTCTACCAAAACCATCGCTTCAATCAAACTCCCTGATTACAAATCTGGCAAGTTGGAAGTCCAGTATCTTCATGAACATGCATCCTTCACAACCACTGTTGGTCTGAACGAGTCCCCTGCTGTGGACTTTTCGGCAACCATTGGTACCCCGGCCATTGCCTTTGGAGCAGAAGCTAGTTTCTTGACAGGTTCCAGAGTGTTTTCTAAGTACAATGCCGGTGTCAGCTTTACACAGCACGATTCAACAGCTTCTGTGATTCTGGCTGACAAAGGAGATTCACTACGGGCGTCATACGTGCATCAACTGAGCAGGCTGAATGGGGGAGCTGTAGTTGGAGAGGTGAACAGAAAGTTCTCCACGAACGAGAACATGCTAACAGTCGGAGGTTCATACGTGGTTGACTCTGAGACGGTTGTGAAAGCGAGGCTCAACAACCACGGCAATCTTGGGGCTCTTTTACAGCACCAGCTCACACCCAAATCTTCACTTACACTCTCTGCAGCCTTCGACACCAAGGCATTAGAGAGGAATCCGAACTTGGGGTTGGCGCTCTCCCTCAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

278

Amino Acids

29.31

Weight (kDa)

8.6

Isoelectric Point (pI)

20.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	2 cut(s)	412, 476
AfiI	CCNNNNNNNGG	3 cut(s)	130, 388, 806
AgsI	TTSAA	3 cut(s)	211, 288, 510
AjuI	GAANNNNNNNTTGG	4 cut(s)	788, 794, 820, 826
AluBI	AGCT	6 cut(s)	215, 440, 492, 515, 593, 736
AluI	AGCT	6 cut(s)	215, 440, 492, 515, 593, 736
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	238, 668
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	13, 417
ApeKI	GCWGC	2 cut(s)	173, 767
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	2 cut(s)	202, 817
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	185, 779
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	721
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	238, 668
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	594, 765
BfoI	RGCGCY	1 cut(s)	818
BisI	GCNGC	2 cut(s)	174, 768
BlsI	GCNGC	2 cut(s)	175, 769
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	412, 457
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	356, 574
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	809
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	2 cut(s)	562, 661
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	414, 703, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 388, 806
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	118, 328
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	414, 703, 780
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	3 cut(s)	130, 388, 806
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	563, 663
BseNI	ACTGG	2 cut(s)	118, 328
BseXI	GCAGC	2 cut(s)	185, 779
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	15, 419
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	416, 483
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	130, 388, 806
BsmAI	GTCTC	2 cut(s)	238, 668
BsmBI	CGTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	15, 419
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	246, 721
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	15, 419
BspCNI	CTCAG	2 cut(s)	564, 664
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	412, 457
BspMAI	CTGCAG	1 cut(s)	769
BspT107I	GGYRCC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	118, 328
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	414, 703, 780
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	780
Bst4CI	ACNGT	4 cut(s)	241, 364, 646, 679
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	554
BstBAI	YACGTR	2 cut(s)	562, 661
BstC8I	GCNNGC	2 cut(s)	246, 578
BstDEI	CTNAG	3 cut(s)	471, 572, 672
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	2 cut(s)	202, 817
BstMAI	GTCTC	2 cut(s)	238, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	2 cut(s)	347, 640
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	594, 765
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	185, 779
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	15, 419
BtgI	CCRYGG	1 cut(s)	703
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	5 cut(s)	75, 105, 246, 252, 360
Cac8I	GCNNGC	2 cut(s)	246, 578
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	202, 817
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	2 cut(s)	411, 475
CviAII	CATG	3 cut(s)	338, 344, 637
CviQI	GTAC	2 cut(s)	411, 475
DdeI	CTNAG	3 cut(s)	471, 572, 672
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	1 cut(s)	668
FaeI	CATG	3 cut(s)	341, 347, 640
FaiI	YATR	6 cut(s)	170, 339, 345, 559, 638, 658
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	337, 343, 636
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	174, 768
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	2 cut(s)	174, 768
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	2 cut(s)	201, 816
GluI	GCNGC	2 cut(s)	174, 768
HaeII	RGCGCY	1 cut(s)	818
HaeIII	GGCC	2 cut(s)	15, 419
HapII	CCGG	2 cut(s)	416, 483
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	202, 817
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	3 cut(s)	341, 347, 640
Hin6I	GCGC	2 cut(s)	200, 815
HinP1I	GCGC	2 cut(s)	200, 815
HincII	GTYRAC	2 cut(s)	6, 667
HindII	GTYRAC	2 cut(s)	6, 667
HinfI	GANTC	6 cut(s)	377, 506, 523, 542, 668, 796
HpaII	CCGG	2 cut(s)	416, 483
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	4 cut(s)	6, 391, 610, 667
Hpy188I	TCNGA	4 cut(s)	372, 650, 673, 801
Hpy188III	TCNNGA	4 cut(s)	235, 338, 448, 459
Hpy8I	GTNNAC	4 cut(s)	6, 391, 610, 667
HpyAV	CCTTC	3 cut(s)	276, 361, 781
HpyCH4III	ACNGT	4 cut(s)	241, 364, 646, 679
HpyCH4IV	ACGT	2 cut(s)	561, 660
HpyCH4V	TGCA	3 cut(s)	347, 565, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	471, 572, 672
HpySE526I	ACGT	2 cut(s)	561, 660
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	3 cut(s)	341, 347, 640
HspAI	GCGC	2 cut(s)	200, 815
KpnI	GGTACC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	431, 590
Lsp1109I	GCAGC	2 cut(s)	185, 779
LweI	GCATC	2 cut(s)	356, 574
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	561, 660
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	5 cut(s)	16, 97, 150, 326, 741
MhlI	GDGCHC	2 cut(s)	246, 721
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	386, 662
MmeI	TCCRAC	3 cut(s)	300, 580, 628
MnlI	CCTC	9 cut(s)	5, 32, 134, 143, 598, 644, 684, 786, 833
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	2 cut(s)	416, 483
MspR9I	CCNGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	416
NlaIII	CATG	3 cut(s)	341, 347, 640
NlaIV	GGNNCC	2 cut(s)	412, 457
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	347, 640
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	506, 523, 542, 796
PkrI	GCNGC	2 cut(s)	175, 769
PleI	GAGTC	2 cut(s)	385, 662
PpsI	GAGTC	2 cut(s)	385, 662
Ppu21I	YACGTR	2 cut(s)	562, 661
PspN4I	GGNNCC	2 cut(s)	412, 457
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	412, 476
RsaNI	GTAC	2 cut(s)	411, 475
RseI	CAYNNNNRTG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	174, 768
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	386, 662
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	246, 721
SfaNI	GCATC	2 cut(s)	356, 574
SfcI	CTRYAG	2 cut(s)	594, 765
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	4 cut(s)	241, 364, 646, 679
TaiI	ACGT	2 cut(s)	564, 663
TaqI	TCGA	4 cut(s)	5, 204, 236, 774
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	4 cut(s)	506, 523, 542, 796
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	5 cut(s)	82, 112, 246, 259, 367
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	173, 767
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	326, 354, 645
TspRI	CASTG	5 cut(s)	82, 112, 246, 259, 367
XceI	RCATGY	2 cut(s)	347, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.