FvH4_2g33140

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003645
Physical Location & Seq
Reverse (-)
24916948 .. 24919275
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33140.t1

Sequence Viewer

Length: 834 bp
ATGTCGACCAAAGGCCCTGCTCTCTGTTGTGACATTGGCAAAAGCGCCAGAGATTTGCTCTACAAGGATTACAGCTCAGACCAGAAGATCAGCTTCACCACTTTCAGTGAGACTGGCGTTGCCATCAGCTCCTCCTTGGCCAATAAAGGAGGTATCTCTCTTGGGGATGTAGCTGCTCAGTACAAGTACAAGAAGGCTACGGTTGATATCAAAGCTGATACAGAAACAACTGTCTCAACAAAGCTCACCTTCACAGACGTCCTGCCTTCGACAAAAGCCACTGCTTCAATCAAATTCCCTGACTACGAGTCTGGCAAGTTGGAAGCACAATATCTTCATCAACATGCATCTTTCACAACGGCTGTTGGTTTGAACAAGTCTCCTGCTGTTGACTTCTCAGCAACCATCGGTACCCCCACCATTGCGTTTGGAGCAGAAGCTAGTTACTTGACAGCTTGTAGAGCATTCTCTAAATATACTGCTGGTGTCAGCTTGTCAAAGCCAGATTCATCAGCTTCAGTAATTCTGTGTGACAAAGGAGACACGATTAAGGCATCATACCTGCATCATCTAAGCAAGCTGAATGGGGGTGCTGTTGTGGGAGAGGTAAGTAGAAGGTTTTCCACAAATGAGAACACGCTAACAGTTGGAGGTTCGTTTGTGGTTGACCCTCAGACTACAGTAAAGGCAAGGCTCAACAACCATGGCAATCTTGCGGCTCTTTTACAGCATGAGATTAGTCCCAAATCCACCTTCACATTATCTGGTGCCTTAGACACCAAGACCTTACAAAAGGAGCCAAAGTTTGGTTTGGCACTCTCCCTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

278

Amino Acids

29.27

Weight (kDa)

8.99

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 5 - 270 1.6e-66 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 570
Acc65I GGTACC 1 cut(s) 410
AccB1I GGYRCC 2 cut(s) 410, 767
AccB7I CCANNNNNTGG 1 cut(s) 806
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 716
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 182, 188, 412
AfiI CCNNNNNNNGG 1 cut(s) 806
AgsI TTSAA 2 cut(s) 288, 373
AhdI GACNNNNNGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
Alw26I GTCTC 4 cut(s) 104, 238, 384, 534
AoxI GGCC 2 cut(s) 13, 138
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 619
Asp718I GGTACC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 88, 238
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 410, 767
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 131, 413
BceAI ACGGC 1 cut(s) 375
BcoDI GTCTC 4 cut(s) 104, 238, 384, 534
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 570
BisI GCNGC 2 cut(s) 174, 717
BlsI GCNGC 2 cut(s) 175, 718
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 3 cut(s) 412, 769, 798
BmsI GCATC 3 cut(s) 356, 563, 574
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpuEI CTTGAG 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 135, 703
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 135, 703
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 4 cut(s) 90, 191, 411, 686
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 2 cut(s) 15, 140
BshNI GGYRCC 2 cut(s) 410, 767
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 4 cut(s) 104, 238, 384, 534
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 2 cut(s) 15, 140
Bsp143I GATC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 1 cut(s) 716
BspANI GGCC 2 cut(s) 15, 140
BspCNI CTCAG 4 cut(s) 89, 190, 410, 685
BspLI GGNNCC 3 cut(s) 412, 769, 798
BspMI ACCTGC 1 cut(s) 570
BspT107I GGYRCC 2 cut(s) 410, 767
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 135, 703
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 135, 703
Bst4CI ACNGT 4 cut(s) 202, 232, 646, 682
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 6 cut(s) 76, 177, 397, 572, 672, 772
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 4 cut(s) 104, 238, 384, 534
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 431, 461
BstNSI RCATGY 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 678
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 15, 140
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 112, 279
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 578
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 181, 187, 411
CviAII CATG 3 cut(s) 344, 704, 731
CviQI GTAC 3 cut(s) 181, 187, 411
DdeI CTNAG 6 cut(s) 76, 177, 397, 572, 672, 772
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DriI GACNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 135, 703
Eco32I GATATC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 14
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 135, 703
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 135, 703
FaeI CATG 3 cut(s) 347, 707, 734
FaiI YATR 5 cut(s) 345, 477, 559, 705, 732
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 233, 265
FaqI GGGAC 1 cut(s) 726
FatI CATG 3 cut(s) 343, 703, 730
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 174, 717
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 174, 717
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 174, 717
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 2 cut(s) 15, 140
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 3 cut(s) 347, 707, 734
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 3 cut(s) 6, 391, 667
HindII GTYRAC 3 cut(s) 6, 391, 667
HinfI GANTC 2 cut(s) 308, 506
HphI GGTGA 2 cut(s) 88, 238
Hpy166II GTNNAC 3 cut(s) 6, 391, 667
Hpy188I TCNGA 2 cut(s) 79, 675
Hpy8I GTNNAC 3 cut(s) 6, 391, 667
HpyAV CCTTC 5 cut(s) 187, 259, 276, 609, 763
HpyCH4III ACNGT 4 cut(s) 202, 232, 646, 682
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 347, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 461
HpyF3I CTNAG 6 cut(s) 76, 177, 397, 572, 672, 772
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 3 cut(s) 347, 707, 734
HspAI GCGC 1 cut(s) 45
KpnI GGTACC 1 cut(s) 414
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 134, 431, 796
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 3 cut(s) 356, 563, 574
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 29, 443, 530
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 97, 326
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 293, 522
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 300, 628
MnlI CCTC 6 cut(s) 142, 143, 598, 644, 681, 833
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 619
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 431, 461
NcoI CCATGG 1 cut(s) 703
NdeII GATC 1 cut(s) 87
NlaIII CATG 3 cut(s) 347, 707, 734
NlaIV GGNNCC 3 cut(s) 412, 769, 798
NmuCI GTSAC 2 cut(s) 29, 530
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 347
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 619
PfeI GAWTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 2 cut(s) 175, 718
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 412, 769, 798
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 3 cut(s) 182, 188, 412
RsaNI GTAC 3 cut(s) 181, 187, 411
RseI CAYNNNNRTG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 2 cut(s) 174, 717
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 317
SfaNI GCATC 3 cut(s) 356, 563, 574
SfcI CTRYAG 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
Sse9I AATT 2 cut(s) 293, 522
SsiI CCGC 1 cut(s) 716
SspMI CTAG 1 cut(s) 441
StyI CCWWGG 2 cut(s) 135, 703
TaaI ACNGT 4 cut(s) 202, 232, 646, 682
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 5, 269
TasI AATT 2 cut(s) 293, 522
TatI WGTACW 2 cut(s) 180, 186
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 2 cut(s) 112, 286
TseFI GTSAC 2 cut(s) 29, 530
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 2 cut(s) 29, 530
TspDTI ATGAA 2 cut(s) 326, 498
TspRI CASTG 2 cut(s) 112, 286
Van91I CCANNNNNTGG 1 cut(s) 806
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 619
XspI CTAG 1 cut(s) 441
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.