Rroxscaffold_7G00159330

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003645
Physical Location & Seq
Reverse (-)
2558591 .. 2560919
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159330.1

Sequence Viewer

Length: 747 bp
ATGTCAACCAAAGGCCCTGCTCTCTTCTCTGACATTGGCAAAAGAGCCAGAGATTTGCTCGACAAGGATTACAGCTCTGACCAGAAGATCAGCATCACCACTTACAGTGACACTGGCCTTGTAAAGCTCATCCCGCATCCCATTGTCTCAACAAAACTCACCGTTACAGACGTCCTGCCTTCAACAAAAGCCATTGCTTCAGTCAAATTCCCTGACTACAAATCTGGCAAGTTGGAAGCACAATATCTTCATGAACATGCATCTTTCACAACAGCTGTTGGTTTGAACAAGTCCCCTGCCGTTGACTTTTCAGCAACCATCGGTACCCCCACCATTACTTTTGGAGCAGAAGCTAGTTACTTGACAGCTTCCAGAAGATTCACTAAATATACTGCTGGTGTCAGCTTGTCAAAGCCAGATTCCTCCGCTTCAGTAATTCTGGCTGACAAAGGAGACTCGATTAAGGCATCATACCTGCATCATCTAAGCAAGCTGAATGGGGGTGCTGTTGTGGGAGAGGTAAGTAGAAGGTTTTCCACAAATGAGAACACACTCACAGTTGGAGGTTCGTTTGTGGTTGACCCTCAGACTACAGTAAAGGCAAGGCTTAACAACCATGGGAATCTTGCGGCTCTTCTGCAGCATGAGCTTAGTCCCAAATCCACCTTCACATTCTCTGGTGCCTTGGACACGAAGACCTTACAAAAGGAGCCGAAATTTGGTTTGGCACTCTCCCTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

248

Amino Acids

26.45

Weight (kDa)

9.5

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 49 - 241 2.5e-49 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 483
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 680
AciI CCGC 3 cut(s) 134, 426, 629
AcsI RAATTY 2 cut(s) 206, 716
AcuI CTGAAG 2 cut(s) 183, 414
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 2 cut(s) 183, 286
AjuI GAANNNNNNNTTGG 4 cut(s) 650, 682, 707, 739
AluBI AGCT 8 cut(s) 75, 127, 275, 353, 368, 405, 493, 649
AluI AGCT 8 cut(s) 75, 127, 275, 353, 368, 405, 493, 649
Alw26I GTCTC 2 cut(s) 151, 447
AoxI GGCC 2 cut(s) 13, 115
ApeKI GCWGC 1 cut(s) 640
ApoI RAATTY 2 cut(s) 206, 716
Asp700I GAANNNNTTC 1 cut(s) 532
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 88, 151
BanI GGYRCC 2 cut(s) 323, 680
BbsI GAAGAC 1 cut(s) 701
BbvI GCAGC 1 cut(s) 652
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 151, 447
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 2 cut(s) 591, 638
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 2 cut(s) 630, 641
BlsI GCNGC 2 cut(s) 631, 642
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 3 cut(s) 325, 682, 711
BmsI GCATC 5 cut(s) 102, 145, 269, 476, 487
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpuEI CTTGAG 1 cut(s) 722
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 616, 684
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 616, 684
BseGI GGATG 2 cut(s) 129, 136
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 652
BshFI GGCC 2 cut(s) 15, 117
BshNI GGYRCC 2 cut(s) 323, 680
BslFI GGGAC 2 cut(s) 277, 639
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 151, 447
BsmFI GGGAC 2 cut(s) 277, 639
BsnI GGCC 2 cut(s) 15, 117
Bsp143I GATC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 3 cut(s) 134, 426, 629
BspANI GGCC 2 cut(s) 15, 117
BspCNI CTCAG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 325, 682, 711
BspMAI CTGCAG 1 cut(s) 642
BspMI ACCTGC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 2 cut(s) 323, 680
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 616, 684
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 616, 684
Bst4CI ACNGT 4 cut(s) 107, 163, 559, 595
Bst6I CTCTTC 2 cut(s) 29, 639
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 485, 585, 650
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 129, 136
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 151, 447
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 133, 646
BstNSI RCATGY 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 591, 638
BstV1I GCAGC 1 cut(s) 652
BstV2I GAAGAC 1 cut(s) 701
BsuRI GGCC 2 cut(s) 15, 117
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 2 cut(s) 129, 136
BtsIMutI CAGTG 2 cut(s) 111, 112
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 491
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 324
CviAII CATG 4 cut(s) 251, 257, 617, 644
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 485, 585, 650
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 29, 639
EarI CTCTTC 2 cut(s) 29, 639
Eco130I CCWWGG 2 cut(s) 616, 684
Eco57I CTGAAG 2 cut(s) 183, 414
EcoO109I RGGNCCY 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 616, 684
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 2 cut(s) 616, 684
FaeI CATG 4 cut(s) 254, 260, 620, 647
FaiI YATR 6 cut(s) 252, 258, 390, 472, 618, 645
FaqI GGGAC 2 cut(s) 277, 639
FatI CATG 4 cut(s) 250, 256, 616, 643
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 630, 641
FokI GGATG 2 cut(s) 116, 123
Fsp4HI GCNGC 2 cut(s) 630, 641
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 630, 641
HaeIII GGCC 2 cut(s) 15, 117
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 254, 260, 620, 647
HincII GTYRAC 3 cut(s) 6, 304, 580
HindII GTYRAC 3 cut(s) 6, 304, 580
HinfI GANTC 4 cut(s) 378, 419, 455, 622
HphI GGTGA 2 cut(s) 88, 151
Hpy166II GTNNAC 3 cut(s) 6, 304, 580
Hpy188I TCNGA 3 cut(s) 31, 79, 588
Hpy188III TCNNGA 2 cut(s) 251, 372
Hpy8I GTNNAC 3 cut(s) 6, 304, 580
HpyAV CCTTC 3 cut(s) 189, 522, 676
HpyCH4III ACNGT 4 cut(s) 107, 163, 559, 595
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 260, 478, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 646
HpyF3I CTNAG 3 cut(s) 485, 585, 650
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 254, 260, 620, 647
KpnI GGTACC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 344, 709
Lsp1109I GCAGC 1 cut(s) 652
LweI GCATC 5 cut(s) 102, 145, 269, 476, 487
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 107, 163, 356
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 6 cut(s) 16, 97, 239, 387, 626, 706
MluCI AATT 3 cut(s) 206, 435, 716
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 2 cut(s) 213, 541
MnlI CCTC 5 cut(s) 433, 511, 557, 594, 746
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 2 cut(s) 462, 609
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 133, 646
NcoI CCATGG 1 cut(s) 616
NdeII GATC 1 cut(s) 87
NlaIII CATG 4 cut(s) 254, 260, 620, 647
NlaIV GGNNCC 3 cut(s) 325, 682, 711
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 260
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 639
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 3 cut(s) 378, 419, 622
PkrI GCNGC 2 cut(s) 631, 642
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 325, 682, 711
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 642
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 462, 609
SatI GCNGC 2 cut(s) 630, 641
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 449
SfaNI GCATC 5 cut(s) 102, 145, 269, 476, 487
SfcI CTRYAG 2 cut(s) 591, 638
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 3 cut(s) 206, 435, 716
SsiI CCGC 3 cut(s) 134, 426, 629
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 2 cut(s) 616, 684
TaaI ACNGT 4 cut(s) 107, 163, 559, 595
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 60, 458
TasI AATT 3 cut(s) 206, 435, 716
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 3 cut(s) 378, 419, 622
Tru1I TTAA 2 cut(s) 462, 609
Tru9I TTAA 2 cut(s) 462, 609
TscAI CASTG 2 cut(s) 112, 118
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 640
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 239, 267
TspRI CASTG 2 cut(s) 112, 118
XapI RAATTY 2 cut(s) 206, 716
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.