Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Reverse (-)

13346071 .. 13346742

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGGTGACTTACGCCAGCGGGTGGATAGACCTACTTATACAAAACCATATCCGCCATATGTTGACCAAGTTCCATTGCCGCATCGATATCGTGTTCCGACTTTCCATTTGTTTTCTGGAGATGCGTATCAGTCCACAGTTGAGCATATCGGACGTTTCATTTCACAGTGTGGTGAGGCGAATAGTGAAGAAAACCGCAATGAGACGACTCAAGAATATACAGGACGGTTCAAGCTCCTTAGAACTAGATGCAAAGCTCAATTGCCGGAGTCAGAGTTCATGGAGATGGCTTTGGCTGGTCTAGGTTTTGAGTTCCGCAAGAAATTTGAGGGTCTGACATTCAGGGATCTTTATGAGCTTGAGTGCTACGATACGATACGATTCTTCGAGAAGAAATGCAGAGGAAGCTCGCTTCTAAAGGAACCTACTACACAAGTCAGGCCGTTGGCGCGGCTCATATTGAAGAGTGGAGCAGTGATGATGATATGGCCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

167

Amino Acids

19.5

Weight (kDa)

8.88

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccII	CGCG	1 cut(s)	454
AciI	CCGC	6 cut(s)	22, 56, 83, 199, 319, 454
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	235, 466
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	238, 260, 361, 411
AluI	AGCT	4 cut(s)	238, 260, 361, 411
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	2 cut(s)	443, 491
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	20, 188
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	249, 305
BisI	GCNGC	2 cut(s)	83, 455
BlsI	GCNGC	2 cut(s)	84, 456
BmiI	GGNNCC	1 cut(s)	426
BmsI	GCATC	3 cut(s)	94, 115, 242
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	198, 383
Bsa29I	ATCGAT	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	77, 208
Bse8I	GATNNNNATC	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	77, 208
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	445, 493
BshVI	ATCGAT	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	445, 493
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	6 cut(s)	22, 56, 83, 199, 319, 454
BspANI	GGCC	2 cut(s)	445, 493
BspDI	ATCGAT	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	357
BsrDI	GCAATG	2 cut(s)	77, 208
BssMI	GATC	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	142, 171, 231
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	20, 413
BstDEI	CTNAG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 451
BstUI	CGCG	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	445, 493
BsuTUI	ATCGAT	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	176, 483
Cac8I	GCNNGC	2 cut(s)	20, 413
CfoI	GCGC	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	88
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	9 cut(s)	238, 260, 293, 299, 361, 411, 445, 457, 493
CviKI_1	RGCY	9 cut(s)	238, 260, 293, 299, 361, 411, 445, 457, 493
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	1 cut(s)	286
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	15
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	83, 455
Fsp4HI	GCNGC	2 cut(s)	83, 455
FspBI	CTAG	2 cut(s)	249, 305
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	83, 455
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	445, 493
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	211, 272, 384
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	20, 188
Hpy166II	GTNNAC	2 cut(s)	67, 138
Hpy188I	TCNGA	4 cut(s)	102, 155, 277, 339
Hpy188III	TCNNGA	3 cut(s)	120, 215, 391
Hpy8I	GTNNAC	2 cut(s)	67, 138
HpyCH4III	ACNGT	3 cut(s)	142, 171, 231
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	255, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 451
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	243, 473
LpnPI	CCDG	7 cut(s)	32, 105, 210, 282, 285, 331, 427
LweI	GCATC	3 cut(s)	94, 115, 242
MaeI	CTAG	2 cut(s)	249, 305
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	203, 379, 406, 478
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	263, 326
MlyI	GAGTC	2 cut(s)	205, 281
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	172, 325, 398
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	408, 451
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	384
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	84, 456
PleI	GAGTC	2 cut(s)	205, 280
PpsI	GAGTC	2 cut(s)	205, 280
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	287
SatI	GCNGC	2 cut(s)	83, 455
Sau3AI	GATC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	205, 281
SetI	ASST	8 cut(s)	37, 160, 240, 262, 310, 363, 413, 430
SfaNI	GCATC	3 cut(s)	94, 115, 242
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	213, 362
SmoI	CTYRAG	2 cut(s)	213, 362
Sse9I	AATT	2 cut(s)	263, 326
SsiI	CCGC	6 cut(s)	22, 56, 83, 199, 319, 454
SspMI	CTAG	2 cut(s)	249, 305
TaaI	ACNGT	3 cut(s)	142, 171, 231
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	88, 390
TasI	AATT	2 cut(s)	263, 326
TauI	GCSGC	2 cut(s)	85, 457
TfiI	GAWTC	1 cut(s)	384
TscAI	CASTG	2 cut(s)	176, 483
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	151, 271
TspRI	CASTG	2 cut(s)	176, 483
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	2 cut(s)	249, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.