Rmu_sc0028470.1_g000001

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028470.1
OG0016242
Physical Location & Seq
Reverse (-)
134 .. 442
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028470.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atggaaagagctttccatgagcaattctacagagccgaaccagaagtcacaatcgctgatttagcaaaaatgtatcaagaagcacatgagtcggcccaagatttcttaaatagatttaaggccgcaagaaataagtgtagagtcaatctgggagagttagagtttgttcgaatagctcagcaaggtctgaattatgaattgcgcaagaaatatgagggagttgatattagagacatctttgaattaaccactagcgtggctagatatgaggcaatcattagagaagagactcaagctagatcagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

102

Amino Acids

12.03

Weight (kDa)

5.74

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 203
AciI CCGC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 242
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 3 cut(s) 11, 176, 296
AluI AGCT 3 cut(s) 11, 176, 296
Alw26I GTCTC 2 cut(s) 225, 281
AoxI GGCC 2 cut(s) 93, 120
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcoDI GTCTC 2 cut(s) 225, 281
BfaI CTAG 3 cut(s) 252, 261, 297
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 1 cut(s) 123
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 191
BshFI GGCC 2 cut(s) 95, 122
BsmAI GTCTC 2 cut(s) 225, 281
BsnI GGCC 2 cut(s) 95, 122
Bsp119I TTCGAA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 95, 122
BspCNI CTCAG 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 169
BssMI GATC 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 2 cut(s) 225, 281
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 62, 302
BstSFI CTRYAG 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 256
BsuRI GGCC 2 cut(s) 95, 122
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 2 cut(s) 17, 86
CviJI RGCY 8 cut(s) 11, 35, 95, 122, 176, 260, 296, 305
CviKI_1 RGCY 8 cut(s) 11, 35, 95, 122, 176, 260, 296, 305
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
FaeI CATG 2 cut(s) 20, 89
FaiI YATR 5 cut(s) 18, 87, 195, 213, 267
FatI CATG 2 cut(s) 16, 85
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 3 cut(s) 252, 261, 297
FspI TGCGCA 1 cut(s) 203
GlaI GCGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 2 cut(s) 95, 122
HhaI GCGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 20, 89
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 3 cut(s) 89, 141, 289
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 302
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 20, 89
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 2 cut(s) 54, 134
MaeI CTAG 3 cut(s) 252, 261, 297
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 1 cut(s) 296
MluCI AATT 4 cut(s) 23, 190, 197, 242
MlyI GAGTC 3 cut(s) 98, 150, 283
MnlI CCTC 2 cut(s) 208, 262
MseI TTAA 3 cut(s) 107, 117, 245
MslI CAYNNNNRTG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 62, 302
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 20, 89
NmuCI GTSAC 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 203
NspV TTCGAA 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 254
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 3 cut(s) 97, 149, 283
PpsI GAGTC 3 cut(s) 97, 149, 283
PspPI GGNCC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 3 cut(s) 107, 117, 245
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 3 cut(s) 98, 150, 283
SetI ASST 4 cut(s) 13, 178, 187, 298
SfcI CTRYAG 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 4 cut(s) 23, 190, 197, 242
SsiI CCGC 1 cut(s) 123
SspMI CTAG 3 cut(s) 252, 261, 297
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 23, 190, 197, 242
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 107, 117, 245
Tru9I TTAA 3 cut(s) 107, 117, 245
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 210
XspI CTAG 3 cut(s) 252, 261, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.