Rh6DG198800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016242
Physical Location & Seq
Reverse (-)
35473907 .. 35474248
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG198800.1

Sequence Viewer

Length: 342 bp
ATGGCAGCCGACATGAGTACAAAGCAGAAAGACCTCTCTATGGCTGAAGGAGTGATGGTGGGTTTAATCAAGCTTTCTCCTTCTAAGTTAACAACTGCTCAAGTCCCAGTGGCCGCAGTGCTATGTGGAAGGTGCCAGAAGGAGGTTGGTCTTGATAAAATTCTGCAACCAAAGACTCATGACAGCGACAGAGTCAAGGAGAAAGGTAAGCTGGTTGATCAAGGGGTTGCTCAAAAGTCTCAGTCACAAGTGCAAAGCGGTCAGAGAATATCTTCGGCCACAGAACCAAGTTATTGTAGAAGGCGTGGAGAAGAGCCCGCTAAGAGAGAGAGAGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.34

Weight (kDa)

9.44

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 3 cut(s) 114, 258, 318
AcoI YGGCCR 2 cut(s) 111, 276
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 40, 142
AluBI AGCT 2 cut(s) 73, 211
AluI AGCT 2 cut(s) 73, 211
Alw26I GTCTC 2 cut(s) 243, 327
AoxI GGCC 2 cut(s) 111, 276
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 49
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 243, 327
BisI GCNGC 2 cut(s) 6, 114
BlsI GCNGC 2 cut(s) 7, 115
BmiI GGNNCC 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 142
Bse1I ACTGG 2 cut(s) 107, 337
BseLI CCNNNNNNNGG 2 cut(s) 40, 142
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 107, 337
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 113, 278
BshNI GGYRCC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 40, 142
BsmAI GTCTC 2 cut(s) 243, 327
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 113, 278
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 3 cut(s) 114, 258, 318
BspANI GGCC 2 cut(s) 113, 278
BspCNI CTCAG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 327
BsrI ACTGG 2 cut(s) 107, 337
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 84, 240, 321
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 243, 327
BstMBI GATC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 113, 278
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 114, 123
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 178
Csp6I GTAC 1 cut(s) 18
CviAII CATG 2 cut(s) 13, 179
CviJI RGCY 7 cut(s) 8, 44, 73, 113, 211, 278, 316
CviKI_1 RGCY 7 cut(s) 8, 44, 73, 113, 211, 278, 316
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 84, 240, 321
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 111, 276
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 2 cut(s) 16, 182
FaiI YATR 4 cut(s) 14, 41, 124, 180
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 12, 178
FauI CCCGC 1 cut(s) 325
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 6, 114
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 6, 114
GluI GCNGC 2 cut(s) 6, 114
HaeIII GGCC 2 cut(s) 113, 278
Hin1II CATG 2 cut(s) 16, 182
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 175, 192
HpaI GTTAAC 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 152, 179
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 5 cut(s) 41, 90, 123, 133, 294
HpyCH4V TGCA 2 cut(s) 166, 253
HpyF3I CTNAG 3 cut(s) 84, 240, 321
Hsp92II CATG 2 cut(s) 16, 182
Ksp22I TGATCA 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 306
LpnPI CCDG 3 cut(s) 120, 149, 197
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 243
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 264, 323
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 1 cut(s) 159
MlyI GAGTC 2 cut(s) 169, 201
MnlI CCTC 2 cut(s) 44, 136
MroXI GAANNNNTTC 1 cut(s) 271
MseI TTAA 2 cut(s) 65, 89
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 16, 182
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 243
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 7, 115
PleI GAGTC 2 cut(s) 169, 200
PpsI GAGTC 2 cut(s) 169, 200
PspN4I GGNNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 65, 89
SatI GCNGC 2 cut(s) 6, 114
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 2 cut(s) 169, 201
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 36, 75, 134, 147, 208, 213
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 159
SsiI CCGC 3 cut(s) 114, 258, 318
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 65, 89
Tru9I TTAA 2 cut(s) 65, 89
TscAI CASTG 2 cut(s) 114, 123
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 243
TspRI CASTG 2 cut(s) 114, 123
Tth111I GACNNNGTC 1 cut(s) 191
XapI RAATTY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.