Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Forward (+)

81293346 .. 81295415

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCACTTGAGTCAAGTGGGAATAAGACTTCGTACTCTTCATCGGCAGAGCAATCAGCCGATGAACGTAGAGCTCAAGAAACAACAAAGACCGCAAAGGCCGAACTAGCCGCAAGACAAGAAGCTACACAAGCAACGACAACCGACGCCGCCCTAGAGTTTGTCCGGATAGCTCAACAAGGTCTAAATTACGAGTTGCGCAAGAAATATGAAGGAGTTGATATTAGGGACATCTTTGAATTAACCACTAGCGTGGCAAGATATGAGGCAATCATTAGAGAAGAAACTCAAGCTAGATCGGCCTCAAAGGGAACTTACTATAAGAATCCTACCGTCCATGCCATGGAGGCCAAGTTTGAAAGTTTGAAGGTCGAGGAAGAAGATTCAGCCGATATCAATGCCGCCGAATTATTTATAAACAAGCCGGTGGTCCGTAAGGCCCTTGCAAAGCCAACAAACCCAATTAAGGATAAACCTCGACCGATAACCTACCATACCAAAGATGGCACACCTTTGAGACCGACACCCACCCGCACTTACACTTTTGATATCACGAAGGCCGACATAATTTTTGATCAACTTCTTGCCGAGAAAGTAATTAAATTGCCAAACGGCCATGTTATACCCAAAGCCGATGAAATTAGAAATAAGTCTTATTGTAAATTTCACAATTCATGGAAGCATTCCACTAACAATTGTGTGGTTTACCGTGATGCATTGCAGGATCTCATCGAAAAAGGAAAGGCGAAGTTTCCGAGAGACGAGCAAACCAGCTCTCACCTTGTCGATACCGACCCTTTTCCGGTCAACATGGTGTACGTCAATTTCCCAAGAGGTCACGGGAGGAATTGGCCTAATATGAACTTGTCCGATCCCGTGGCCCGTAGGAGGTATATGTTTCGTGACCGCAGGAGGGAGCCGGTTTATGACGGTCGGGATGAAGATGCTTATGATATGACAATGCCACCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

324

Amino Acids

37.09

Weight (kDa)

8.59

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
Acc16I	TGCGCA	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	7 cut(s)	93, 111, 150, 402, 532, 907, 968
AclWI	GGATC	2 cut(s)	732, 866
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	35, 818
AfiI	CCNNNNNNNGG	5 cut(s)	343, 466, 802, 888, 913
AgsI	TTSAA	3 cut(s)	239, 359, 367
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	5 cut(s)	74, 125, 173, 293, 774
AluI	AGCT	5 cut(s)	74, 125, 173, 293, 774
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	511, 753
AlwI	GGATC	2 cut(s)	732, 866
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	8 cut(s)	99, 300, 348, 438, 558, 613, 851, 879
ApoI	RAATTY	1 cut(s)	662
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	430, 439, 880
AsuHPI	GGTGA	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	628
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	511, 753
BfaI	CTAG	4 cut(s)	107, 155, 249, 294
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	3 cut(s)	111, 150, 402
BlsI	GCNGC	3 cut(s)	112, 151, 403
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	3 cut(s)	430, 439, 880
BmiI	GGNNCC	1 cut(s)	918
BmsI	GCATC	2 cut(s)	703, 934
BpuEI	CTTGAG	3 cut(s)	29, 60, 273
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	342, 876
BsaWI	WCCGGW	2 cut(s)	165, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	5 cut(s)	343, 466, 802, 888, 913
Bse118I	RCCGGY	2 cut(s)	424, 919
Bse3DI	GCAATG	1 cut(s)	716
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	342, 876
BseGI	GGATG	1 cut(s)	943
BseLI	CCNNNNNNNGG	5 cut(s)	343, 466, 802, 888, 913
BseMI	GCAATG	1 cut(s)	716
Bsh1285I	CGRYCG	2 cut(s)	482, 934
BshFI	GGCC	8 cut(s)	101, 302, 350, 440, 560, 615, 853, 881
BsiEI	CGRYCG	2 cut(s)	482, 934
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	4 cut(s)	166, 425, 803, 920
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	5 cut(s)	343, 466, 802, 888, 913
BsmAI	GTCTC	2 cut(s)	511, 753
BsmBI	CGTCTC	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	8 cut(s)	101, 302, 350, 440, 560, 615, 853, 881
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	296, 574, 724, 871
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	7 cut(s)	93, 111, 150, 402, 532, 907, 968
BspANI	GGCC	8 cut(s)	101, 302, 350, 440, 560, 615, 853, 881
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	918
BspPI	GGATC	2 cut(s)	732, 866
BspTNI	GGTCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	424, 919
BssAI	RCCGGY	2 cut(s)	424, 919
BssECI	CCNNGG	2 cut(s)	342, 876
BssMI	GATC	4 cut(s)	296, 574, 724, 871
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	334, 710, 932
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	147
BstDSI	CCRYGG	2 cut(s)	342, 876
BstF5I	GGATG	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	299, 577, 727, 874
BstMAI	GTCTC	2 cut(s)	511, 753
BstMBI	GATC	4 cut(s)	296, 574, 724, 871
BstMCI	CGRYCG	2 cut(s)	482, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 131, 299, 347
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	724
BsuRI	GGCC	8 cut(s)	101, 302, 350, 440, 560, 615, 853, 881
BtgI	CCRYGG	2 cut(s)	342, 876
BtsCI	GGATG	1 cut(s)	943
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	2 cut(s)	424, 919
Cfr13I	GGNCC	3 cut(s)	430, 439, 880
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	34, 817
CviAII	CATG	5 cut(s)	338, 343, 617, 675, 811
CviQI	GTAC	2 cut(s)	34, 817
DpnI	GATC	4 cut(s)	298, 576, 726, 873
DpnII	GATC	4 cut(s)	296, 574, 724, 871
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	2 cut(s)	394, 550
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRV	GATATC	2 cut(s)	394, 550
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	5 cut(s)	341, 346, 620, 678, 814
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	5 cut(s)	337, 342, 616, 674, 810
FauI	CCCGC	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	111, 150, 402
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	111, 150, 402
FspBI	CTAG	4 cut(s)	107, 155, 249, 294
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	3 cut(s)	111, 150, 402
HaeIII	GGCC	8 cut(s)	101, 302, 350, 440, 560, 615, 853, 881
HapII	CCGG	4 cut(s)	166, 425, 803, 920
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	341, 346, 620, 678, 814
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	3 cut(s)	11, 325, 383
HpaII	CCGG	4 cut(s)	166, 425, 803, 920
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	3 cut(s)	706, 808, 817
Hpy188I	TCNGA	2 cut(s)	756, 871
Hpy188III	TCNNGA	5 cut(s)	77, 166, 553, 902, 935
Hpy8I	GTNNAC	3 cut(s)	706, 808, 817
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	206, 361, 550
HpyCH4III	ACNGT	3 cut(s)	334, 710, 932
HpyCH4IV	ACGT	2 cut(s)	67, 819
HpyCH4V	TGCA	3 cut(s)	446, 716, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 131, 299, 347
HpySE526I	ACGT	2 cut(s)	67, 819
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	341, 346, 620, 678, 814
HspAI	GCGC	1 cut(s)	199
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	296, 574, 724, 871
LmnI	GCTCC	1 cut(s)	916
LpnPI	CCDG	7 cut(s)	179, 438, 707, 784, 816, 895, 933
LweI	GCATC	2 cut(s)	703, 934
MaeI	CTAG	4 cut(s)	107, 155, 249, 294
MaeII	ACGT	2 cut(s)	67, 819
MaeIII	GTNAC	3 cut(s)	3, 836, 902
MalI	GATC	4 cut(s)	298, 576, 726, 873
MboI	GATC	4 cut(s)	296, 574, 724, 871
MboII	GAAGA	5 cut(s)	30, 293, 389, 392, 953
MfeI	CAATTG	1 cut(s)	694
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	259, 313, 340, 367, 486, 827, 837, 882, 906
Mph1103I	ATGCAT	1 cut(s)	718
MroI	TCCGGA	1 cut(s)	165
MseI	TTAA	3 cut(s)	242, 465, 600
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	4 cut(s)	166, 425, 803, 920
MunI	CAATTG	1 cut(s)	694
Mva1269I	GAATGC	1 cut(s)	682
MwoI	GCNNNNNNNGC	4 cut(s)	107, 131, 299, 347
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	4 cut(s)	296, 574, 724, 871
NlaIII	CATG	5 cut(s)	341, 346, 620, 678, 814
NlaIV	GGNNCC	1 cut(s)	918
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	3 cut(s)	3, 836, 902
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	718
OliI	CACNNNNGTG	1 cut(s)	251
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	325, 383
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	112, 151, 403
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	918
PspPI	GGNCC	3 cut(s)	430, 439, 880
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	2 cut(s)	35, 818
RsaNI	GTAC	2 cut(s)	34, 817
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	242, 465, 600
SatI	GCNGC	3 cut(s)	111, 150, 402
Sau3AI	GATC	4 cut(s)	296, 574, 724, 871
Sau96I	GGNCC	3 cut(s)	430, 439, 880
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	2 cut(s)	703, 934
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	8, 75, 288
SmoI	CTYRAG	3 cut(s)	8, 75, 288
SsiI	CCGC	7 cut(s)	93, 111, 150, 402, 532, 907, 968
SspMI	CTAG	4 cut(s)	107, 155, 249, 294
SstI	GAGCTC	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	334, 710, 932
TaiI	ACGT	2 cut(s)	70, 822
TaqI	TCGA	4 cut(s)	372, 478, 732, 786
TaqII	GACCGA	2 cut(s)	496, 535
TauI	GCSGC	3 cut(s)	113, 152, 404
TfiI	GAWTC	2 cut(s)	325, 383
Tru1I	TTAA	3 cut(s)	242, 465, 600
Tru9I	TTAA	3 cut(s)	242, 465, 600
TseFI	GTSAC	3 cut(s)	3, 836, 902
Tsp45I	GTSAC	3 cut(s)	3, 836, 902
TspDTI	ATGAA	7 cut(s)	30, 78, 225, 651, 663, 875, 954
TspGWI	ACGGA	1 cut(s)	422
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XspI	CTAG	4 cut(s)	107, 155, 249, 294
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.