Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Reverse (-)

46091800 .. 46104889

Gene Structure 13090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG348000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGTAGCTGGTTTGAGCTTCAAATTCAGAGAACATTTTGAAGGTGTTACCTTCAATGATCTATTCGAGCTCGAGACAAGAATCGATCGGTATGATGCCATCTTGAGGGATGAAGCTCAAAAGCGGGCAGCATCAAAGGGTACGTATTACAAGAATCAGGCTGTTAATGCGGTCGACAGGTTTGGAGTGGACTTAAACGAAGACACGGTCTTTGATGAGGCCGAATCAGTAAATGAGTGCAATGCCCAGATTGAGACACAGAAGACTTACATGCAAGTTCATGCAATTGTAACTAGGAACCTGGCGTCATGTTCAATACCAATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

4.83

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	3 cut(s)	5, 127, 173
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	25, 44, 58, 318
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	11, 21, 73, 119
AluI	AGCT	4 cut(s)	11, 21, 73, 119
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	71, 251
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	4 cut(s)	195, 197, 227, 229
AvaI	CYCGRG	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	210, 272
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	71, 251
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	88, 143
BpiI	GAAGAC	2 cut(s)	210, 272
BpuEI	CTTGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	87
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	91, 177
BshFI	GGCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	2 cut(s)	91, 177
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	71, 251
BsnI	GGCC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	61, 88
BspACI	CCGC	3 cut(s)	5, 127, 173
BspANI	GGCC	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	250
BssMI	GATC	2 cut(s)	61, 88
BssNI	GRCGYC	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	64, 91
BstMAI	GTCTC	2 cut(s)	71, 251
BstMBI	GATC	2 cut(s)	61, 88
BstMCI	CGRYCG	2 cut(s)	91, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	303
BstSNI	TACGTA	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	210, 272
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	274, 284, 312
CviJI	RGCY	6 cut(s)	11, 21, 73, 119, 164, 224
CviKI_1	RGCY	6 cut(s)	11, 21, 73, 119, 164, 224
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	2 cut(s)	63, 90
DpnII	GATC	2 cut(s)	61, 88
Ecl136II	GAGCTC	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	3 cut(s)	277, 287, 315
FaiI	YATR	6 cut(s)	96, 275, 285, 313, 329, 331
FatI	CATG	3 cut(s)	273, 283, 311
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	277, 287, 315
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	84, 157, 227
Hpy166II	GTNNAC	2 cut(s)	178, 193
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	2 cut(s)	76, 106
Hpy8I	GTNNAC	2 cut(s)	178, 193
HpyAV	CCTTC	2 cut(s)	38, 64
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	243, 277, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	277, 287, 315
Kzo9I	GATC	2 cut(s)	61, 88
LpnPI	CCDG	5 cut(s)	146, 166, 263, 290, 317
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	88, 143
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	49, 292
MalI	GATC	2 cut(s)	63, 90
MboI	GATC	2 cut(s)	61, 88
MboII	GAAGA	2 cut(s)	215, 277
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	26, 288, 324
MnlI	CCTC	2 cut(s)	102, 214
MseI	TTAA	2 cut(s)	168, 197
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	61, 88
NlaIII	CATG	3 cut(s)	277, 287, 315
NlaIV	GGNNCC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	84, 157, 227
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	133
Ple19I	CGATCG	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	168, 197
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	61, 88
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	13, 23, 49, 56, 75, 121, 149, 185, 306
SfaNI	GCATC	2 cut(s)	88, 143
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	74, 106
SmoI	CTYRAG	2 cut(s)	74, 106
SnaBI	TACGTA	1 cut(s)	147
Sse9I	AATT	3 cut(s)	26, 288, 324
SsiI	CCGC	3 cut(s)	5, 127, 173
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	4 cut(s)	69, 75, 87, 177
TasI	AATT	3 cut(s)	26, 288, 324
TfiI	GAWTC	3 cut(s)	84, 157, 227
Tru1I	TTAA	2 cut(s)	168, 197
Tru9I	TTAA	2 cut(s)	168, 197
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	129, 272
Tth111I	GACNNNGTC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.