Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Reverse (-)

55050085 .. 55107576

Gene Structure 57492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG339600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAGAGGAAAACAAAACAAAAAGCCAGGTGCCCAGCACCCAGAGAGCCTAGAAGTCATTTAACCGGCAAAAATGATGTGTGTGATTTTGGAGTTGTTATGCTCGAATTGTTGACTGGAAAACCAGTTATTGACACCAATCGGCCAACCAGGGAACATGATCTAGTTGAATGGGCCAAACCATACCTTGCCAGCAAATACCTCACAGGTAAAACTTTCCAGGTGATGACAAACCAAGAAGTTGTGGATGCCATAAAAAATATAAAGGATTCTCGGGCAGCAGCAAAGCACCTTACTGAAGAGCCAGTCAATAGGAAGAGCTCGGACGATATTTCCTGTGTAGTTGTAAGATTTCGGGACATTTTTGAATTAACCACTAGCGTGGCTAGATACGAGGCAATCATCAAAGAAGAAACTCGAGCTAGATCAGCCTCAAAGGGAACTTATTATAAGAATCCTACTGTTCATGCTATGGAGGCCAATTTCAAAGGTTTGAAGGTCGAGGAAGAAGATTCGGCCGATATCAATGCTGCCGAATTGTTTATAAACAAACCAGTGATTGCTTCTGGTGTCTGCATCCCGGAAGACCAGACTAACAAAGTCATCACAATTGAGAGAAAATCGTTGCCATCTTTGGCCGAGAGAGATGATGATAATGGGTGTGTAGCTTTGGTGGTGGGAGTACTAGCCAACCATGTAAGTCTTTATGAAGTCGGCGGAATGAAATGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

244

Amino Acids

27.14

Weight (kDa)

8.14

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	450, 545
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	1 cut(s)	717
AcoI	YGGCCR	3 cut(s)	143, 516, 636
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	170, 368, 487, 496
AjnI	CCWGG	3 cut(s)	26, 149, 219
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	321, 422, 668
AluI	AGCT	3 cut(s)	321, 422, 668
Alw21I	GWGCWC	1 cut(s)	323
Ama87I	CYCGRG	2 cut(s)	273, 417
AoxI	GGCC	5 cut(s)	143, 174, 477, 516, 636
ApeKI	GCWGC	3 cut(s)	278, 281, 530
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	2 cut(s)	273, 417
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	290, 293, 517
BccI	CCATC	1 cut(s)	637
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	3 cut(s)	28, 151, 221
BcnI	CCSGG	1 cut(s)	581
BfaI	CTAG	6 cut(s)	51, 164, 378, 387, 423, 686
BisI	GCNGC	3 cut(s)	279, 282, 531
BlsI	GCNGC	3 cut(s)	280, 283, 532
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	4 cut(s)	28, 151, 221, 581
BmeT110I	CYCGRG	2 cut(s)	273, 417
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	4 cut(s)	28, 151, 221, 581
BmsI	GCATC	2 cut(s)	238, 585
BpiI	GAAGAC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	4 cut(s)	121, 125, 305, 554
BseBI	CCWGG	3 cut(s)	28, 151, 221
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	253, 576
BseNI	ACTGG	4 cut(s)	121, 125, 305, 554
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	290, 293, 517
BseYI	CCCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	5 cut(s)	145, 176, 479, 518, 638
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	2 cut(s)	273, 417
BsiSI	CCGG	2 cut(s)	66, 581
BslFI	GGGAC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	145, 176, 479, 518, 638
BsoBI	CYCGRG	2 cut(s)	273, 417
Bsp1286I	GDGCHC	2 cut(s)	35, 323
Bsp143I	GATC	2 cut(s)	160, 425
BspACI	CCGC	1 cut(s)	717
BspANI	GGCC	5 cut(s)	145, 176, 479, 518, 638
BspLI	GGNNCC	1 cut(s)	32
BspQI	GCTCTTC	2 cut(s)	294, 311
BspT107I	GGYRCC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	121, 125, 305, 554
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	160, 425
Bst2UI	CCWGG	3 cut(s)	28, 151, 221
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	294, 311
BstC8I	GCNNGC	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	253, 576
BstKTI	GATC	2 cut(s)	163, 428
BstMBI	GATC	2 cut(s)	160, 425
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 476
BstNI	CCWGG	3 cut(s)	28, 151, 221
BstSCI	CCNGG	4 cut(s)	26, 149, 219, 579
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	290, 293, 517
BstV2I	GAAGAC	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	145, 176, 479, 518, 638
BtsCI	GGATG	2 cut(s)	253, 576
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	4 cut(s)	158, 467, 695, 732
CviQI	GTAC	1 cut(s)	683
DpnI	GATC	2 cut(s)	162, 427
DpnII	GATC	2 cut(s)	160, 425
EaeI	YGGCCR	3 cut(s)	143, 516, 636
EagI	CGGCCG	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	294, 311
EarI	CTCTTC	2 cut(s)	294, 311
EciI	GGCGGA	1 cut(s)	732
Ecl136II	GAGCTC	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	523
Eco52I	CGGCCG	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	273, 417
EcoICRI	GAGCTC	1 cut(s)	321
EcoRII	CCWGG	3 cut(s)	26, 149, 219
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	4 cut(s)	161, 470, 698, 735
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	157, 466, 694, 731
Fnu4HI	GCNGC	3 cut(s)	279, 282, 531
FokI	GGATG	2 cut(s)	260, 563
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	279, 282, 531
FspBI	CTAG	6 cut(s)	51, 164, 378, 387, 423, 686
GluI	GCNGC	3 cut(s)	279, 282, 531
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	5 cut(s)	145, 176, 479, 518, 638
HapII	CCGG	2 cut(s)	66, 581
Hin1II	CATG	4 cut(s)	161, 470, 698, 735
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	269, 454, 512
HpaII	CCGG	2 cut(s)	66, 581
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	576, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 476
Hsp92II	CATG	4 cut(s)	161, 470, 698, 735
Kzo9I	GATC	2 cut(s)	160, 425
LguI	GCTCTTC	2 cut(s)	294, 311
Lsp1109I	GCAGC	3 cut(s)	290, 293, 517
LweI	GCATC	2 cut(s)	238, 585
MaeI	CTAG	6 cut(s)	51, 164, 378, 387, 423, 686
MalI	GATC	2 cut(s)	162, 427
MboI	GATC	2 cut(s)	160, 425
MboII	GAAGA	7 cut(s)	16, 311, 328, 422, 518, 521, 596
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	35, 323
MluCI	AATT	5 cut(s)	107, 368, 481, 536, 609
MnlI	CCTC	5 cut(s)	212, 388, 442, 469, 496
MseI	TTAA	2 cut(s)	62, 371
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	2 cut(s)	66, 581
MspR9I	CCNGG	4 cut(s)	28, 151, 221, 581
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	3 cut(s)	28, 151, 221
MwoI	GCNNNNNNNGC	2 cut(s)	428, 476
NciI	CCSGG	1 cut(s)	581
NdeII	GATC	2 cut(s)	160, 425
NlaIII	CATG	4 cut(s)	161, 470, 698, 735
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	417
PciSI	GCTCTTC	2 cut(s)	294, 311
PfeI	GAWTC	3 cut(s)	269, 454, 512
PfoI	TCCNGGA	1 cut(s)	579
PkrI	GCNGC	3 cut(s)	280, 283, 532
PsiI	TTATAA	2 cut(s)	450, 545
Psp124BI	GAGCTC	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	26, 149, 219
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	3 cut(s)	26, 149, 219
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	417
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	323
SapI	GCTCTTC	2 cut(s)	294, 311
SaqAI	TTAA	2 cut(s)	62, 371
SatI	GCNGC	3 cut(s)	279, 282, 531
Sau3AI	GATC	2 cut(s)	160, 425
Sau96I	GGNCC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	684
ScrFI	CCNGG	4 cut(s)	28, 151, 221, 581
SduI	GDGCHC	2 cut(s)	35, 323
SfaNI	GCATC	2 cut(s)	238, 585
Sfr274I	CTCGAG	1 cut(s)	417
SlaI	CTCGAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	5 cut(s)	107, 368, 481, 536, 609
SsiI	CCGC	1 cut(s)	717
SspMI	CTAG	6 cut(s)	51, 164, 378, 387, 423, 686
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	4 cut(s)	26, 149, 219, 579
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	105, 418, 501
TasI	AATT	5 cut(s)	107, 368, 481, 536, 609
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	269, 454, 512
Tru1I	TTAA	2 cut(s)	62, 371
Tru9I	TTAA	2 cut(s)	62, 371
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	3 cut(s)	278, 281, 530
TspDTI	ATGAA	3 cut(s)	17, 455, 723
TspRI	CASTG	1 cut(s)	561
XhoI	CTCGAG	1 cut(s)	417
XspI	CTAG	6 cut(s)	51, 164, 378, 387, 423, 686
ZrmI	AGTACT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.