Rh3CG291200

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016242
Physical Location & Seq
Forward (+)
29600517 .. 29600720
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG291200.1

Sequence Viewer

Length: 204 bp
ATGGCGGTAGCTGGTTTAAGCTTCAAATTCAGAGAACATTTTGAAGGTGTTACCTTCAATGATCTATTCGAGCTCGAGACAAGAATCGACCGGTATGATGCCATCTTAAGGGAGGAAGCTCAAAAGCGGGCATCATCAAAGGGTACGTATTACAAGAATCAGGCCATTAATGCGGTCGACCAGTTTGGAGCGGACTTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

67

Amino Acids

7.71

Weight (kDa)

5.24

Isoelectric Point (pI)

19.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 177
AciI CCGC 4 cut(s) 5, 127, 173, 191
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 108
AflII CTTAAG 1 cut(s) 106
AgeI ACCGGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 25, 44, 58
AluBI AGCT 4 cut(s) 11, 21, 73, 119
AluI AGCT 4 cut(s) 11, 21, 73, 119
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 26
AseI ATTAAT 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 90
AvaI CYCGRG 1 cut(s) 74
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 74
BmsI GCATC 2 cut(s) 88, 140
BsaAI YACGTR 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 181
Bsh1285I CGRYCG 2 cut(s) 91, 177
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 91, 177
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 4 cut(s) 5, 127, 173, 191
BspANI GGCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 2 cut(s) 91, 177
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSNI TACGTA 1 cut(s) 147
BsuRI GGCC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 90
Csp6I GTAC 1 cut(s) 144
CspAI ACCGGT 1 cut(s) 90
CviJI RGCY 5 cut(s) 11, 21, 73, 119, 164
CviKI_1 RGCY 5 cut(s) 11, 21, 73, 119, 164
CviQI GTAC 1 cut(s) 144
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 75
FaiI YATR 1 cut(s) 96
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 84, 157
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 38, 64
HpyCH4IV ACGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 146
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 3 cut(s) 104, 146, 194
LweI GCATC 2 cut(s) 88, 140
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 191
MboI GATC 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 26
MnlI CCTC 1 cut(s) 106
MseI TTAA 4 cut(s) 17, 107, 168, 197
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 74
PfeI GAWTC 2 cut(s) 84, 157
PinAI ACCGGT 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 75
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SacI GAGCTC 1 cut(s) 75
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 4 cut(s) 17, 107, 168, 197
Sau3AI GATC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 75
SetI ASST 7 cut(s) 13, 23, 49, 56, 75, 121, 149
SfaNI GCATC 2 cut(s) 88, 140
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 74, 106
SmoI CTYRAG 2 cut(s) 74, 106
SnaBI TACGTA 1 cut(s) 147
Sse9I AATT 1 cut(s) 26
SsiI CCGC 4 cut(s) 5, 127, 173, 191
SstI GAGCTC 1 cut(s) 75
TaiI ACGT 1 cut(s) 149
TaqI TCGA 4 cut(s) 69, 75, 87, 177
TasI AATT 1 cut(s) 26
TfiI GAWTC 2 cut(s) 84, 157
Tru1I TTAA 4 cut(s) 17, 107, 168, 197
Tru9I TTAA 4 cut(s) 17, 107, 168, 197
Vha464I CTTAAG 1 cut(s) 106
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.