Retrotransposon gag protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g21401 FvH4_1g29791 FvH4_1g29792 |
| rosa_chinensis | RchiOBHm_Chr1g0329401 |
| rosa_multiflora | Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00059280 |
| rosa_samantha | Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 177 |
| AciI | CCGC | 2 cut(s) | 127, 173 |
| AcsI | RAATTY | 1 cut(s) | 26 |
| AfaI | GTAC | 2 cut(s) | 145, 149 |
| AgsI | TTSAA | 4 cut(s) | 25, 58, 188, 215 |
| AluBI | AGCT | 3 cut(s) | 11, 21, 119 |
| AluI | AGCT | 3 cut(s) | 11, 21, 119 |
| AoxI | GGCC | 1 cut(s) | 162 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| ApoI | RAATTY | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 143 |
| BccI | CCATC | 1 cut(s) | 110 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BfmI | CTRYAG | 1 cut(s) | 6 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| BmsI | GCATC | 2 cut(s) | 88, 143 |
| BpuEI | CTTGAG | 1 cut(s) | 127 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaAI | YACGTR | 1 cut(s) | 147 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseXI | GCAGC | 1 cut(s) | 143 |
| Bsh1285I | CGRYCG | 2 cut(s) | 91, 177 |
| BshFI | GGCC | 1 cut(s) | 164 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiEI | CGRYCG | 2 cut(s) | 91, 177 |
| BsnI | GGCC | 1 cut(s) | 164 |
| Bsp143I | GATC | 3 cut(s) | 61, 72, 88 |
| BspACI | CCGC | 2 cut(s) | 127, 173 |
| BspANI | GGCC | 1 cut(s) | 164 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BssMI | GATC | 3 cut(s) | 61, 72, 88 |
| BstBAI | YACGTR | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 1 cut(s) | 129 |
| BstKTI | GATC | 3 cut(s) | 64, 75, 91 |
| BstMBI | GATC | 3 cut(s) | 61, 72, 88 |
| BstMCI | CGRYCG | 2 cut(s) | 91, 177 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 170 |
| BstSFI | CTRYAG | 1 cut(s) | 6 |
| BstSNI | TACGTA | 1 cut(s) | 147 |
| BstV1I | GCAGC | 1 cut(s) | 143 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuRI | GGCC | 1 cut(s) | 164 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| Cac8I | GCNNGC | 1 cut(s) | 129 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| Csp6I | GTAC | 2 cut(s) | 144, 148 |
| CviJI | RGCY | 5 cut(s) | 5, 11, 21, 119, 164 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 11, 21, 119, 164 |
| CviQI | GTAC | 2 cut(s) | 144, 148 |
| DpnI | GATC | 3 cut(s) | 63, 74, 90 |
| DpnII | GATC | 3 cut(s) | 61, 72, 88 |
| Eco105I | TACGTA | 1 cut(s) | 147 |
| FaiI | YATR | 1 cut(s) | 96 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FblI | GTMKAC | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 164 |
| HincII | GTYRAC | 2 cut(s) | 178, 193 |
| HindII | GTYRAC | 2 cut(s) | 178, 193 |
| HinfI | GANTC | 3 cut(s) | 84, 157, 206 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 193 |
| Hpy188I | TCNGA | 1 cut(s) | 32 |
| Hpy188III | TCNNGA | 2 cut(s) | 70, 106 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 193 |
| HpyAV | CCTTC | 1 cut(s) | 64 |
| HpyCH4IV | ACGT | 1 cut(s) | 146 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 170 |
| HpySE526I | ACGT | 1 cut(s) | 146 |
| Kzo9I | GATC | 3 cut(s) | 61, 72, 88 |
| LpnPI | CCDG | 2 cut(s) | 146, 166 |
| Lsp1109I | GCAGC | 1 cut(s) | 143 |
| LweI | GCATC | 2 cut(s) | 88, 143 |
| MaeII | ACGT | 1 cut(s) | 146 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 3 cut(s) | 63, 74, 90 |
| MboI | GATC | 3 cut(s) | 61, 72, 88 |
| MboII | GAAGA | 2 cut(s) | 125, 215 |
| MluCI | AATT | 1 cut(s) | 26 |
| MnlI | CCTC | 1 cut(s) | 37 |
| MseI | TTAA | 2 cut(s) | 168, 197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 170 |
| NdeII | GATC | 3 cut(s) | 61, 72, 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 66 |
| PfeI | GAWTC | 3 cut(s) | 84, 157, 206 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| Ple19I | CGATCG | 1 cut(s) | 91 |
| Ppu21I | YACGTR | 1 cut(s) | 147 |
| PvuI | CGATCG | 1 cut(s) | 91 |
| RsaI | GTAC | 2 cut(s) | 145, 149 |
| RsaNI | GTAC | 2 cut(s) | 144, 148 |
| SalI | GTCGAC | 1 cut(s) | 176 |
| SaqAI | TTAA | 2 cut(s) | 168, 197 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 3 cut(s) | 61, 72, 88 |
| SetI | ASST | 6 cut(s) | 13, 23, 56, 121, 149, 185 |
| SfaNI | GCATC | 2 cut(s) | 88, 143 |
| SfcI | CTRYAG | 1 cut(s) | 6 |
| SgeI | CNNG | 8 cut(s) | 24, 82, 93, 118, 140, 166, 173, 193 |
| SmlI | CTYRAG | 1 cut(s) | 106 |
| SmoI | CTYRAG | 1 cut(s) | 106 |
| SnaBI | TACGTA | 1 cut(s) | 147 |
| Sse9I | AATT | 1 cut(s) | 26 |
| SsiI | CCGC | 2 cut(s) | 127, 173 |
| TaiI | ACGT | 1 cut(s) | 149 |
| TaqI | TCGA | 4 cut(s) | 69, 75, 87, 177 |
| TasI | AATT | 1 cut(s) | 26 |
| TfiI | GAWTC | 3 cut(s) | 84, 157, 206 |
| Tru1I | TTAA | 2 cut(s) | 168, 197 |
| Tru9I | TTAA | 2 cut(s) | 168, 197 |
| TseI | GCWGC | 1 cut(s) | 131 |
| XapI | RAATTY | 1 cut(s) | 26 |
| XmiI | GTMKAC | 1 cut(s) | 177 |