Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009469.1

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Forward (+)

21779 .. 24104

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009469.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atgtcaagtctcccaatgacatcagttcaaccatcagcttcgatgtcaagtgagatctctacgagtggagtcatggcacatcctgcatcatcagtcgttacaaccgccacggtagtgtcagcctccactacagcgagtcatccatctttcagtcagcagccgcagtcacatatcgtgcaagtctcagggacaacaaaccgagttgattttacaactgcggctggtactcgaccgtatgatcctgtaacttatccatggggcctaccactagggtatacccctccttatgagtcagtcagtgtgccagcagctacagccagtactggatcgttcccttgggggttccctccaggctataatcctttgtatgatctgcttaatgcgtctgcaacgagtcttaaccatgatcttgacaacattgaagatggcatcagtcggttgggccgaagttttgaaaattgtttcactcggctcgaccgcactcttgaaaataattttaggcaactcaaccgtagtatgggagtccattctgatatgatgaatgcgtggctacgttggtttcagccatggctaaaccaagcggcaaatcaaggatatggccaacaagttcccctgcatcagaatccaccacatcatgcagagcatggaatacgatggcagcctatccaaaaccagcaacaaccaattcagccatggcatggcgataataatagacctgttctctttaatgaagttcataatctagtggaaggcatggtgggtgatctgcgccagcgggtaaatcgacctacttatacgaagccgtatccaccttatattgaccaagttcctttaccgcatcgatatcgtgttcccgctttccatttgttttctggggatgcttatcaatccacggttgaacatatcgggcgatttcacaaggcagagcagaacataccagtagctgagttggctaaatcatttcagacgaccaataagaccgctcaagagtatatagggagatttaaactcctaagagccagatgcaaagcgcagttatcagaattcgagtttgtagagatggcattggtaggacttggcttcgagttcaggaaaaatttcgaaggtctgacattcagagatctttatgaacttgaatccagagccataagatacgatgaaattttgagagaagaagtgcagaaaaggcttgcttcaaaaggcacatactacactagtcaggccgttggcgcagcccattttgaagagtggagtagcgatgaagatatggccgaaattaattcggctgagcttactgtgaaatggccttttgacttaatcgatcaaggaaagctcaagttctttgacaagtcaagctctacaatgaaggtggacaacgaccctttcccggctgccaaagtgaatatgattagtgctgggattcctatggcagccaacatgaatgcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

483

Amino Acids

54.31

Weight (kDa)

6.25

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	983
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	9 cut(s)	105, 161, 218, 478, 581, 775, 836, 855, 981
AclWI	GGATC	2 cut(s)	233, 334
AcoI	YGGCCR	2 cut(s)	598, 1269
AcsI	RAATTY	3 cut(s)	1043, 1096, 1161
AfaI	GTAC	2 cut(s)	226, 322
AfiI	CCNNNNNNNGG	3 cut(s)	517, 698, 1387
AgsI	TTSAA	8 cut(s)	29, 422, 455, 488, 899, 1136, 1197, 1244
AhlI	ACTAGT	1 cut(s)	1214
AjnI	CCWGG	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	6 cut(s)	38, 311, 944, 1291, 1333, 1356
AluI	AGCT	6 cut(s)	38, 311, 944, 1291, 1333, 1356
Alw26I	GTCTC	2 cut(s)	14, 187
AlwI	GGATC	2 cut(s)	233, 334
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	6 cut(s)	259, 442, 598, 1221, 1269, 1304
ApeKI	GCWGC	6 cut(s)	157, 308, 658, 1232, 1391, 1430
ApoI	RAATTY	3 cut(s)	1043, 1096, 1161
AseI	ATTAAT	1 cut(s)	1278
Asp700I	GAANNNNTTC	1 cut(s)	1097
AspLEI	GCGC	3 cut(s)	771, 1033, 1232
AspS9I	GGNCC	2 cut(s)	259, 442
AsuC2I	CCSGG	1 cut(s)	1388
AsuHPI	GGTGA	1 cut(s)	773
AsuII	TTCGAA	1 cut(s)	1101
BalI	TGGCCA	1 cut(s)	600
BbvI	GCAGC	6 cut(s)	169, 320, 670, 1244, 1378, 1442
BccI	CCATC	5 cut(s)	40, 151, 419, 648, 1054
BceAI	ACGGC	2 cut(s)	787, 1208
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	1388
BcoDI	GTCTC	2 cut(s)	14, 187
BcuI	ACTAGT	1 cut(s)	1214
BfaI	CTAG	3 cut(s)	269, 743, 1215
BfmI	CTRYAG	2 cut(s)	129, 312
BfuI	GTATCC	1 cut(s)	816
BglII	AGATCT	2 cut(s)	54, 1120
BisI	GCNGC	9 cut(s)	158, 161, 219, 309, 582, 659, 1233, 1392, 1431
BlpI	GCTNAGC	1 cut(s)	1287
BlsI	GCNGC	9 cut(s)	159, 162, 220, 310, 583, 660, 1234, 1393, 1432
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	351, 1388
BmgT120I	GGNCC	2 cut(s)	259, 442
BmiI	GGNNCC	2 cut(s)	260, 344
BmrFI	CCNGG	2 cut(s)	351, 1388
BmsI	GCATC	6 cut(s)	95, 438, 625, 847, 868, 1013
BpmI	CTGGAG	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	1287
Bpu14I	TTCGAA	1 cut(s)	1101
BpuEI	CTTGAG	2 cut(s)	969, 1319
BpuMI	CCSGG	1 cut(s)	1388
Bsa29I	ATCGAT	2 cut(s)	841, 1320
BsaBI	GATNNNNATC	1 cut(s)	882
BsaJI	CCNNGG	6 cut(s)	108, 254, 335, 566, 692, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	517, 698, 1387
Bse1I	ACTGG	3 cut(s)	318, 328, 938
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	2 cut(s)	841, 1320
BseDI	CCNNGG	6 cut(s)	108, 254, 335, 566, 692, 891
BseGI	GGATG	3 cut(s)	79, 139, 883
BseJI	GATNNNNATC	1 cut(s)	882
BseLI	CCNNNNNNNGG	3 cut(s)	517, 698, 1387
BseMII	CTCAG	3 cut(s)	198, 936, 1278
BseNI	ACTGG	3 cut(s)	318, 328, 938
BseXI	GCAGC	6 cut(s)	169, 320, 670, 1244, 1378, 1442
BseYI	CCCAGC	1 cut(s)	1415
BsgI	GTGCAG	1 cut(s)	1199
Bsh1285I	CGRYCG	2 cut(s)	233, 478
BshFI	GGCC	6 cut(s)	261, 444, 600, 1223, 1271, 1306
BshVI	ATCGAT	2 cut(s)	841, 1320
BsiEI	CGRYCG	2 cut(s)	233, 478
BsiSI	CCGG	1 cut(s)	1388
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	517, 698, 1387
BsmAI	GTCTC	2 cut(s)	14, 187
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	547, 1447
BsnI	GGCC	6 cut(s)	261, 444, 600, 1223, 1271, 1306
Bsp119I	TTCGAA	1 cut(s)	1101
Bsp143I	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
Bsp1720I	GCTNAGC	1 cut(s)	1287
Bsp19I	CCATGG	3 cut(s)	254, 566, 692
BspACI	CCGC	9 cut(s)	105, 161, 218, 478, 581, 775, 836, 855, 981
BspANI	GGCC	6 cut(s)	261, 444, 600, 1223, 1271, 1306
BspCNI	CTCAG	3 cut(s)	197, 937, 1279
BspDI	ATCGAT	2 cut(s)	841, 1320
BspLI	GGNNCC	2 cut(s)	260, 344
BspPI	GGATC	2 cut(s)	233, 334
BspT104I	TTCGAA	1 cut(s)	1101
BsrBI	CCGCTC	1 cut(s)	983
BsrI	ACTGG	3 cut(s)	318, 328, 938
BssECI	CCNNGG	6 cut(s)	108, 254, 335, 566, 692, 891
BssMI	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
BssNAI	GTATAC	1 cut(s)	276
BssT1I	CCWWGG	4 cut(s)	254, 335, 566, 692
Bst1107I	GTATAC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	5 cut(s)	112, 234, 512, 895, 1297
Bst6I	CTCTTC	1 cut(s)	1239
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	1101
BstC8I	GCNNGC	3 cut(s)	306, 773, 1191
BstDEI	CTNAG	4 cut(s)	184, 945, 1013, 1287
BstDSI	CCRYGG	5 cut(s)	108, 254, 566, 692, 891
BstF5I	GGATG	3 cut(s)	79, 139, 883
BstHHI	GCGC	3 cut(s)	771, 1033, 1232
BstKTI	GATC	8 cut(s)	57, 241, 329, 373, 409, 766, 1123, 1324
BstMAI	GTCTC	2 cut(s)	14, 187
BstMBI	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
BstMCI	CGRYCG	2 cut(s)	233, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 314, 950, 1186, 1229
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	349, 1386
BstSFI	CTRYAG	2 cut(s)	129, 312
BstV1I	GCAGC	6 cut(s)	169, 320, 670, 1244, 1378, 1442
BstX2I	RGATCY	2 cut(s)	54, 1120
BstYI	RGATCY	2 cut(s)	54, 1120
BstZ17I	GTATAC	1 cut(s)	276
Bsu15I	ATCGAT	2 cut(s)	841, 1320
BsuI	GTATCC	1 cut(s)	816
BsuRI	GGCC	6 cut(s)	261, 444, 600, 1223, 1271, 1306
BsuTUI	ATCGAT	2 cut(s)	841, 1320
BtgI	CCRYGG	5 cut(s)	108, 254, 566, 692, 891
BtgZI	GCGATG	1 cut(s)	1272
BtsCI	GGATG	3 cut(s)	79, 139, 883
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	306, 773, 1191
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	3 cut(s)	771, 1033, 1232
Cfr13I	GGNCC	2 cut(s)	259, 442
ClaI	ATCGAT	2 cut(s)	841, 1320
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	225, 321
CspCI	CAANNNNNGTGG	2 cut(s)	1350, 1385
CviQI	GTAC	2 cut(s)	225, 321
DdeI	CTNAG	4 cut(s)	184, 945, 1013, 1287
DpnI	GATC	8 cut(s)	56, 240, 328, 372, 408, 765, 1122, 1323
DpnII	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
DraI	TTTAAA	1 cut(s)	1006
EaeI	YGGCCR	2 cut(s)	598, 1269
Eam1104I	CTCTTC	1 cut(s)	1239
EarI	CTCTTC	1 cut(s)	1239
Eco130I	CCWWGG	4 cut(s)	254, 335, 566, 692
Eco32I	GATATC	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	4 cut(s)	254, 335, 566, 692
ErhI	CCWWGG	4 cut(s)	254, 335, 566, 692
FalI	AAGNNNNNCTT	2 cut(s)	1177, 1209
FaqI	GGGAC	1 cut(s)	202
FauI	CCCGC	2 cut(s)	768, 862
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	9 cut(s)	158, 161, 219, 309, 582, 659, 1233, 1392, 1431
FokI	GGATG	3 cut(s)	66, 126, 890
Fsp4HI	GCNGC	9 cut(s)	158, 161, 219, 309, 582, 659, 1233, 1392, 1431
FspBI	CTAG	3 cut(s)	269, 743, 1215
GlaI	GCGC	3 cut(s)	770, 1032, 1231
GluI	GCNGC	9 cut(s)	158, 161, 219, 309, 582, 659, 1233, 1392, 1431
GsaI	CCCAGC	1 cut(s)	1419
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	6 cut(s)	261, 444, 600, 1223, 1271, 1306
HapII	CCGG	1 cut(s)	1388
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	3 cut(s)	771, 1033, 1232
Hin6I	GCGC	3 cut(s)	769, 1031, 1230
HinP1I	GCGC	3 cut(s)	769, 1031, 1230
HinfI	GANTC	8 cut(s)	69, 136, 290, 394, 522, 622, 1136, 1420
HpaII	CCGG	1 cut(s)	1388
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	2 cut(s)	276, 1372
Hpy188I	TCNGA	6 cut(s)	532, 621, 966, 1042, 1110, 1118
Hpy188III	TCNNGA	5 cut(s)	410, 485, 986, 1090, 1140
Hpy8I	GTNNAC	2 cut(s)	276, 1372
HpyAV	CCTTC	3 cut(s)	743, 1097, 1360
HpyCH4III	ACNGT	5 cut(s)	112, 234, 512, 895, 1297
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	8 cut(s)	86, 178, 389, 616, 638, 1026, 1180, 1445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 314, 950, 1186, 1229
HpyF3I	CTNAG	4 cut(s)	184, 945, 1013, 1287
HpySE526I	ACGT	1 cut(s)	553
HspAI	GCGC	3 cut(s)	769, 1031, 1230
Kzo9I	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
Lsp1109I	GCAGC	6 cut(s)	169, 320, 670, 1244, 1378, 1442
LweI	GCATC	6 cut(s)	95, 438, 625, 847, 868, 1013
MaeI	CTAG	3 cut(s)	269, 743, 1215
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	97, 165, 244
MalI	GATC	8 cut(s)	56, 240, 328, 372, 408, 765, 1122, 1323
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
MboII	GAAGA	4 cut(s)	434, 1184, 1256, 1274
MflI	RGATCY	2 cut(s)	54, 1120
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	8 cut(s)	457, 493, 684, 1043, 1096, 1161, 1275, 1279
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	5 cut(s)	78, 145, 299, 403, 531
MnlI	CCTC	3 cut(s)	133, 291, 357
Mox20I	TGGCCA	1 cut(s)	600
MroXI	GAANNNNTTC	1 cut(s)	1097
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	6 cut(s)	378, 399, 726, 1005, 1278, 1316
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	1 cut(s)	1388
MspR9I	CCNGG	2 cut(s)	351, 1388
Mva1269I	GAATGC	2 cut(s)	547, 1447
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	83, 314, 950, 1186, 1229
NciI	CCSGG	1 cut(s)	1388
NcoI	CCATGG	3 cut(s)	254, 566, 692
NdeII	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
NlaIV	GGNNCC	2 cut(s)	260, 344
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	1101
OliI	CACNNNNGTG	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PctI	GAATGC	2 cut(s)	547, 1447
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	3 cut(s)	622, 1136, 1420
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	9 cut(s)	159, 162, 220, 310, 583, 660, 1234, 1393, 1432
PleI	GAGTC	5 cut(s)	77, 144, 298, 402, 530
PpsI	GAGTC	5 cut(s)	77, 144, 298, 402, 530
PshBI	ATTAAT	1 cut(s)	1278
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	1415
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	260, 344
PspPI	GGNCC	2 cut(s)	259, 442
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	2 cut(s)	54, 1120
RsaI	GTAC	2 cut(s)	226, 322
RsaNI	GTAC	2 cut(s)	225, 321
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	6 cut(s)	378, 399, 726, 1005, 1278, 1316
SatI	GCNGC	9 cut(s)	158, 161, 219, 309, 582, 659, 1233, 1392, 1431
Sau3AI	GATC	8 cut(s)	54, 238, 326, 370, 406, 763, 1120, 1321
Sau96I	GGNCC	2 cut(s)	259, 442
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	5 cut(s)	78, 145, 299, 403, 531
ScrFI	CCNGG	2 cut(s)	351, 1388
SfaNI	GCATC	6 cut(s)	95, 438, 625, 847, 868, 1013
SfcI	CTRYAG	2 cut(s)	129, 312
SfuI	TTCGAA	1 cut(s)	1101
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	984, 1334
SmoI	CTYRAG	2 cut(s)	984, 1334
SpeI	ACTAGT	1 cut(s)	1214
Sse9I	AATT	8 cut(s)	457, 493, 684, 1043, 1096, 1161, 1275, 1279
SsiI	CCGC	9 cut(s)	105, 161, 218, 478, 581, 775, 836, 855, 981
SspMI	CTAG	3 cut(s)	269, 743, 1215
StyD4I	CCNGG	2 cut(s)	349, 1386
StyI	CCWWGG	4 cut(s)	254, 335, 566, 692
TaaI	ACNGT	5 cut(s)	112, 234, 512, 895, 1297
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	9 cut(s)	41, 229, 474, 784, 841, 1047, 1083, 1101, 1320
TasI	AATT	8 cut(s)	457, 493, 684, 1043, 1096, 1161, 1275, 1279
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	3 cut(s)	163, 221, 584
TfiI	GAWTC	3 cut(s)	622, 1136, 1420
Tru1I	TTAA	6 cut(s)	378, 399, 726, 1005, 1278, 1316
Tru9I	TTAA	6 cut(s)	378, 399, 726, 1005, 1278, 1316
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	6 cut(s)	157, 308, 658, 1232, 1391, 1430
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	7 cut(s)	554, 725, 744, 1143, 1173, 1275, 1379
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	698
VspI	ATTAAT	1 cut(s)	1278
XapI	RAATTY	3 cut(s)	1043, 1096, 1161
XcmI	CCANNNNNNNNNTGG	2 cut(s)	690, 869
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	3 cut(s)	269, 743, 1215
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.