Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016242

Physical Location & Seq

Genomic Coordinates Forward (+)

23295266 .. 23295919

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29792.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGTTGGCTGGTCTAGGTTTTGAGTTCCGCAAGAAATTTGAGGGTCTGACATTCAGGGATCTTTATGAGCTTGAGTCTAGAGTACTACGGTATGATACGATTCTTCGAGAAGAAATGCAGAGGAAGCTCGCTTCAAAAGGAACCTACTACACAAGTCAGGCCGTTGGCGCTGTCCATATTGAAGAATGGAGTAGTGATGATGATATGGCCGAAGTAAATGTCGCTGAACTCATCGTCAAACGGCCGTTTGTGTGCAAGGCCTTGGAGAAAACAGAGTTAGCTGCACCCGCGAAACTGATTAAATTATCTGTTGGGCATGTTTTACCACCTGACTTAATCGATCAAGGAAAACTCAAATTCCCAGACATGGTGGCTCCTACAATGAAAGTGGACACAGACCCTTTCCCCACAGCTACGGTGAATATGGTCAATGTGGGGGACCACCAGGCCAATGACTCAAGTGTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

158

Amino Acids

17.52

Weight (kDa)

5.23

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21401 FvH4_1g29791 FvH4_1g29792
rosa_chinensis	RchiOBHm_Chr1g0329401
rosa_multiflora	Rmu_co8129536.1_g000001 Rmu_sc0009012.1_g000015 Rmu_sc0009469.1_g000005 Rmu_sc0028470.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059280
rosa_samantha	Rh3CG291200 Rh5AG339600 Rh5DG462600 Rh6DG198800 Rh7DG348000 Rh7DG406000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	31, 291
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	210, 245
AcsI	RAATTY	2 cut(s)	38, 359
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	138, 185
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	4 cut(s)	73, 130, 284, 416
AluI	AGCT	4 cut(s)	73, 130, 284, 416
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	5 cut(s)	162, 210, 245, 261, 450
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	38, 359
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	433, 460
AvaII	GGWCC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	271
BceAI	ACGGC	3 cut(s)	149, 232, 260
BciT130I	CCWGG	1 cut(s)	449
BfaI	CTAG	3 cut(s)	17, 81, 472
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	145, 378, 443
BmrFI	CCNGG	1 cut(s)	449
BpuEI	CTTGAG	2 cut(s)	95, 445
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	449
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseX3I	CGGCCG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	5 cut(s)	164, 212, 247, 263, 452
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	5 cut(s)	164, 212, 247, 263, 452
Bsp143I	GATC	2 cut(s)	61, 343
BspACI	CCGC	2 cut(s)	31, 291
BspANI	GGCC	5 cut(s)	164, 212, 247, 263, 452
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	145, 378, 443
BspPI	GGATC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	61, 343
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	93, 421
BstC8I	GCNNGC	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	64, 346
BstMBI	GATC	2 cut(s)	61, 343
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 170, 290
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BstZI	CGGCCG	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	5 cut(s)	164, 212, 247, 263, 452
BsuTUI	ATCGAT	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	442
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	320, 370
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	2 cut(s)	63, 345
DpnII	GATC	2 cut(s)	61, 343
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	2 cut(s)	210, 245
EagI	CGGCCG	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	323, 373
FaiI	YATR	7 cut(s)	69, 96, 180, 209, 321, 371, 428
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	2 cut(s)	319, 369
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	3 cut(s)	17, 81, 472
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	5 cut(s)	164, 212, 247, 263, 452
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	323, 373
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	3 cut(s)	77, 103, 458
HphI	GGTGA	2 cut(s)	433, 460
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	81, 110
Hpy8I	GTNNAC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	93, 421
HpyCH4V	TGCA	3 cut(s)	121, 258, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 170, 290
Hsp92II	CATG	2 cut(s)	323, 373
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	61, 343
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	6 cut(s)	43, 146, 345, 378, 434, 461
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	3 cut(s)	17, 81, 472
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	2 cut(s)	63, 345
MboI	GATC	2 cut(s)	61, 343
MboII	GAAGA	3 cut(s)	98, 125, 197
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	3 cut(s)	38, 305, 359
MlyI	GAGTC	2 cut(s)	86, 452
MnlI	CCTC	2 cut(s)	37, 117
MseI	TTAA	2 cut(s)	303, 338
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	127, 170, 290
NdeII	GATC	2 cut(s)	61, 343
NlaIII	CATG	2 cut(s)	323, 373
NlaIV	GGNNCC	3 cut(s)	145, 378, 443
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	85, 452
PpsI	GAGTC	2 cut(s)	85, 452
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	145, 378, 443
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	303, 338
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	61, 343
Sau96I	GGNCC	1 cut(s)	442
ScaI	AGTACT	1 cut(s)	87
SchI	GAGTC	2 cut(s)	86, 452
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	8 cut(s)	22, 75, 132, 149, 286, 334, 418, 473
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	74, 460
SmoI	CTYRAG	2 cut(s)	74, 460
Sse9I	AATT	3 cut(s)	38, 305, 359
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	31, 291
SspMI	CTAG	3 cut(s)	17, 81, 472
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	93, 421
TaqI	TCGA	2 cut(s)	109, 342
TasI	AATT	3 cut(s)	38, 305, 359
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	303, 338
Tru9I	TTAA	2 cut(s)	303, 338
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	38, 359
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	3 cut(s)	17, 81, 472
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.