Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Reverse (-)

14725763 .. 14727491

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGATGCGTGGTGGTCCCTGTTAGCGGCTATCCCTGCAGTGGTTGCAGGACAAGCATATCGGGTCAAGAAAAGGCGCACTGAAGAACAGAGATTAAAGAGTGCTAGGGGAAGGGAGAAGAGTTCTGATGAGATTTTTGTCTGTGAGAGGGTATGCACATCAAAGAGAATGCTCAAAAAGGTAGGTGCATTCTCAAAGGACCCTATTCCTGATACGTGTGTTACTGTTTGTGGTGTCTCTGAGCTTGATGCATGCGCTGATGCATGTGCACGCACTGTTTGCGTGAACCAACACCAAGTGCCCAATTGGAATGACATCTGCCTTCGGAGATGCCAGAGTGAATGTCTAAAACTCTCGACCTCCAGTTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.88

Weight (kDa)

8.88

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	28, 43
AflIII	ACRYGT	1 cut(s)	218
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	81, 260
AspS9I	GGNCC	2 cut(s)	18, 202
AvaII	GGWCC	2 cut(s)	18, 202
BaeGI	GKGCMC	2 cut(s)	274, 306
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
Bbv12I	GWGCWC	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	18, 202
BmgT120I	GGNCC	2 cut(s)	18, 202
BmiI	GGNNCC	2 cut(s)	20, 204
BmsI	GCATC	3 cut(s)	241, 253, 323
BpmI	CTGGAG	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 43
Bse1I	ACTGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	28, 43
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	366
BseSI	GKGCMC	2 cut(s)	274, 306
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	28, 43
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	2 cut(s)	177, 191
Bsp1286I	GDGCHC	2 cut(s)	274, 306
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	20, 204
BspMAI	CTGCAG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	229, 280
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	2 cut(s)	47, 282
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	256, 274
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	81, 260
BstMAI	GTCTC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
BstNSI	RCATGY	2 cut(s)	258, 270
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	274, 306
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 81, 276
Cac8I	GCNNGC	2 cut(s)	256, 274
CfoI	GCGC	2 cut(s)	81, 260
Cfr13I	GGNCC	2 cut(s)	18, 202
CviAII	CATG	2 cut(s)	255, 267
CviJI	RGCY	2 cut(s)	32, 247
CviKI_1	RGCY	2 cut(s)	32, 247
DdeI	CTNAG	1 cut(s)	243
DraIII	CACNNNGTG	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	18, 202
Eco57I	CTGAAG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT22I	ATGCAT	2 cut(s)	256, 268
FaeI	CATG	2 cut(s)	258, 270
FaiI	YATR	4 cut(s)	61, 157, 256, 268
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	254, 266
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	80, 259
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	349
HhaI	GCGC	2 cut(s)	81, 260
Hin1II	CATG	2 cut(s)	258, 270
Hin6I	GCGC	2 cut(s)	79, 258
HinP1I	GCGC	2 cut(s)	79, 258
Hpy166II	GTNNAC	2 cut(s)	272, 289
Hpy188I	TCNGA	3 cut(s)	130, 244, 330
Hpy188III	TCNNGA	3 cut(s)	70, 212, 358
Hpy8I	GTNNAC	2 cut(s)	272, 289
HpyAV	CCTTC	2 cut(s)	108, 335
HpyCH4III	ACNGT	2 cut(s)	229, 280
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	7 cut(s)	41, 50, 159, 191, 254, 266, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	258, 270
HspAI	GCGC	2 cut(s)	79, 258
LpnPI	CCDG	5 cut(s)	35, 36, 51, 225, 350
LweI	GCATC	3 cut(s)	241, 253, 323
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	98, 133, 363
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	274, 306
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	2 cut(s)	144, 373
Mph1103I	ATGCAT	2 cut(s)	256, 268
MseI	TTAA	1 cut(s)	98
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	2 cut(s)	177, 191
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
NlaIII	CATG	2 cut(s)	258, 270
NlaIV	GGNNCC	2 cut(s)	20, 204
NsiI	ATGCAT	2 cut(s)	256, 268
NspI	RCATGY	2 cut(s)	258, 270
PaeI	GCATGC	1 cut(s)	258
PctI	GAATGC	2 cut(s)	177, 191
PkrI	GCNGC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	20, 204
PspPI	GGNCC	2 cut(s)	18, 202
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	18, 202
SduI	GDGCHC	2 cut(s)	274, 306
SetI	ASST	5 cut(s)	186, 190, 221, 249, 365
SfaNI	GCATC	3 cut(s)	241, 253, 323
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 202
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	229, 280
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	359
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	3 cut(s)	48, 88, 283
TspRI	CASTG	3 cut(s)	48, 88, 283
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	18, 202
XceI	RCATGY	2 cut(s)	258, 270
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	2 cut(s)	256, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.