Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Reverse (-)

26119325 .. 26119702

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGAAGTGTGGTGGTCCCTGTTAGCAGCTATCCCTGCAGTGGTTGCAGGACAAGCATTTCGAGTGAAGAAAAGGCATGCTGAAGAACAGAGATTAATGAGTGCTAGGGGGAGGGAGAAGAGTTCTGATGAGATCTTTGTCTGTGAAAGGGTATGTACATCAAAGAGAATGCTGAAAAAGGTAGGTGCATTTTCAAAGGATCCAATTCCTGATAGCTGTGTTACCGTGTGCGGTGTATCTGAGCTGGATGCTTGTGCTGATGCATGTGCACGCACTGTTTGCGTAAACCAACATCAAGTACCTAACTGGAATGACATCTGCCTTCGAAGATGCCAGAGTGAATGTCTTAAACTCTCTTCTTCCGGTTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.81

Weight (kDa)

8.58

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	197, 210
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	160, 303
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	198
AluBI	AGCT	3 cut(s)	32, 219, 247
AluI	AGCT	3 cut(s)	32, 219, 247
Alw21I	GWGCWC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	197, 210
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AseI	ATTAAT	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	20, 204
BmsI	GCATC	3 cut(s)	241, 253, 323
Bpu14I	TTCGAA	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	1 cut(s)	177
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	135, 202
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	20, 204
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	197, 210
BspT104I	TTCGAA	1 cut(s)	328
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	135, 202
Bst4CI	ACNGT	2 cut(s)	229, 280
Bst6I	CTCTTC	2 cut(s)	116, 364
BstAPI	GCANNNNNTGC	2 cut(s)	47, 282
BstAUI	TGTACA	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	81, 274
BstDEI	CTNAG	2 cut(s)	243, 375
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	138, 205
BstMBI	GATC	2 cut(s)	135, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
BstNSI	RCATGY	2 cut(s)	83, 270
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	2 cut(s)	135, 202
BstYI	RGATCY	2 cut(s)	135, 202
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 276
Cac8I	GCNNGC	2 cut(s)	81, 274
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	159, 302
CviAII	CATG	2 cut(s)	80, 267
CviJI	RGCY	3 cut(s)	32, 219, 247
CviKI_1	RGCY	3 cut(s)	32, 219, 247
CviQI	GTAC	2 cut(s)	159, 302
DdeI	CTNAG	2 cut(s)	243, 375
DpnI	GATC	2 cut(s)	137, 204
DpnII	GATC	2 cut(s)	135, 202
Eam1104I	CTCTTC	2 cut(s)	116, 364
EarI	CTCTTC	2 cut(s)	116, 364
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	2 cut(s)	83, 270
FaiI	YATR	3 cut(s)	81, 157, 268
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	79, 266
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	30
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	83, 270
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	272, 289
Hpy188I	TCNGA	2 cut(s)	130, 244
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	272, 289
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	229, 280
HpyCH4V	TGCA	5 cut(s)	41, 50, 191, 266, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
HpyF3I	CTNAG	2 cut(s)	243, 375
Hsp92II	CATG	2 cut(s)	83, 270
Kzo9I	GATC	2 cut(s)	135, 202
LpnPI	CCDG	7 cut(s)	35, 36, 51, 225, 233, 295, 350
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	241, 253, 323
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	137, 204
MboI	GATC	2 cut(s)	135, 202
MboII	GAAGA	7 cut(s)	82, 98, 133, 342, 351, 354, 363
MflI	RGATCY	2 cut(s)	135, 202
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	2 cut(s)	98, 351
MspI	CCGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
NdeII	GATC	2 cut(s)	135, 202
NlaIII	CATG	2 cut(s)	83, 270
NlaIV	GGNNCC	2 cut(s)	20, 204
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	83, 270
NspV	TTCGAA	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	20, 204
PspPI	GGNCC	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	135, 202
RsaI	GTAC	2 cut(s)	160, 303
RsaNI	GTAC	2 cut(s)	159, 302
SaqAI	TTAA	2 cut(s)	98, 351
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	135, 202
Sau96I	GGNCC	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	6 cut(s)	34, 186, 190, 221, 249, 307
SfaNI	GCATC	3 cut(s)	241, 253, 323
SfcI	CTRYAG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	1 cut(s)	18
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	229, 280
TaqI	TCGA	2 cut(s)	64, 328
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	98, 351
Tru9I	TTAA	2 cut(s)	98, 351
TscAI	CASTG	2 cut(s)	48, 283
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	2 cut(s)	48, 283
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	98
XceI	RCATGY	2 cut(s)	83, 270
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.