Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Reverse (-)

19765296 .. 19766483

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTGCACGCCAATAATTCATCGTCTCCGACTCCGGATCCTCTATCGCACACGGTGCCAGATTTAGCCGGTACCGTTGAACATGCTCAAATACTCTCACGTCTTTCAACTTATGGGTTAAGTCAACTATTCATCCGTGATAAACAACTGATGATTGAAGAAATGATGTCTATGAATGAACTTCAAGGTATTGTTATCAAAACACCTGCAGAGGCAGGTGAGAAAGATTTCGGAACTAGAACCTTTACAGAGCTATATGATAAACTTCCATACTTTTGCAGAGTTGTTTTCTTCCAAAAACTTGCAGGAAAGTTCTTCCGCAGAGAGTTGATATTGTGGTTCTGCCAGCTCTGCTCCACAGATCAGCACCGGCTTATCAATAATATGTTTGATGATGTGAACTACTGCCAAGTAGACGTCGGAGATTCCGCTGTCGATAGACTACCTGATGAGAGTGAGGCCTTCATAAGACTCGGAACATTTACAGAGCTGCTAGCTACATTTCCTTGGCATTGGGAAGGTTTCAGTCGACTTTGGGAACTTTCTGGCGATGATCAGTCCCGCTATGCTGAATTTTTCTTAGGTTTGTCAACTTTTTGTATCAGAACTCAGTGCTCCGATGATGCTGAAGATCAAGTTGCACTTGCCCTTGAAAAATTCGGATGTGATGTAATTCAGAAACTGCCTTATGAGAGTGAAGAGGATTTTAGAGTCCGAAGGTTTAAAGCGAGCTTTACGAAACTACAGTTCAGTTCCCAGCTTTGTATTGTATCCCAACTACTAGAAGAGTTGGAAAAAACTGAAGAAGAAGATAAAAAGGAAGCTGGAAATAGGGATTTCTGTTCTCGGAACAATATAATATGTTGCAAGTGTTTTGGTGAAGATGCCGAAGAATGGTCTACCCAAAAACAAAATGATGAGGAAGAATGGGAATGGATTCCTGCTGAAAATTATAGGCGGGATAGTTTCTTGGCCAAGGGAAGAAGGGAAGAACTCTGTCTTCCTCAATTCATCAAGGTGAAATGTCCAGATCTAAGGGGAGGAGGAGGATCAACTACAACAACTACACAAGGAGGAGGCAGCAGGGGACTAGTTCGCAACCACAGGCATGCACTAAGAAACAAGTTTCCTTTATCAGCGGCTGTCCCAGTGACTCTCCCTTTTAACACTTCTTTTCTTTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

45.4

Weight (kDa)

5.04

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	206, 214
AatII	GACGTC	1 cut(s)	420
Acc36I	ACCTGC	2 cut(s)	206, 214
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	2 cut(s)	55, 71
AccI	GTMKAC	3 cut(s)	414, 529, 899
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	5 cut(s)	319, 429, 562, 958, 1139
AclWI	GGATC	3 cut(s)	32, 45, 1057
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	2 cut(s)	572, 656
AcuI	CTGAAG	2 cut(s)	648, 822
AcyI	GRCGYC	1 cut(s)	417
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	894
AgsI	TTSAA	5 cut(s)	80, 108, 158, 185, 653
AhlI	ACTAGT	1 cut(s)	1090
AjiI	CACGTC	1 cut(s)	101
AluBI	AGCT	7 cut(s)	253, 349, 490, 497, 732, 760, 824
AluI	AGCT	7 cut(s)	253, 349, 490, 497, 732, 760, 824
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	3 cut(s)	32, 45, 1057
AlwNI	CAGNNNCTG	2 cut(s)	682, 1142
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	2 cut(s)	459, 972
ApeKI	GCWGC	2 cut(s)	490, 1080
ApoI	RAATTY	2 cut(s)	572, 656
Asp700I	GAANNNNTTC	2 cut(s)	227, 936
Asp718I	GGTACC	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	230, 890, 1030
AsuNHI	GCTAGC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	974
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	2 cut(s)	55, 71
BbsI	GAAGAC	1 cut(s)	992
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	2 cut(s)	477, 1092
BciVI	GTATCC	1 cut(s)	781
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	30
BcuI	ACTAGT	1 cut(s)	1090
BfaI	CTAG	4 cut(s)	237, 494, 782, 1091
BfmI	CTRYAG	2 cut(s)	207, 743
BfuAI	ACCTGC	2 cut(s)	206, 214
BfuI	GTATCC	1 cut(s)	781
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	3 cut(s)	491, 1081, 1140
BlsI	GCNGC	3 cut(s)	492, 1082, 1141
BmgBI	CACGTC	1 cut(s)	101
BmiI	GGNNCC	3 cut(s)	39, 57, 73
BmrI	ACTGGG	1 cut(s)	1142
BmsI	GCATC	2 cut(s)	613, 874
BmtI	GCTAGC	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	1142
BpiI	GAAGAC	1 cut(s)	992
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	506, 975
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	894
Bse118I	RCCGGY	2 cut(s)	68, 369
Bse1I	ACTGG	1 cut(s)	1148
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	506, 975
BseGI	GGATG	2 cut(s)	132, 668
BseLI	CCNNNNNNNGG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	1148
BseRI	GAGGAG	3 cut(s)	1056, 1059, 1089
BseXI	GCAGC	2 cut(s)	477, 1092
BseYI	CCCAGC	1 cut(s)	756
BshFI	GGCC	2 cut(s)	461, 974
BshNI	GGYRCC	2 cut(s)	55, 71
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	35, 69, 370
BslFI	GGGAC	3 cut(s)	544, 1101, 1130
BslI	CCNNNNNNNGG	1 cut(s)	894
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	3 cut(s)	544, 1101, 1130
BsnI	GGCC	2 cut(s)	461, 974
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
BspACI	CCGC	5 cut(s)	319, 429, 562, 958, 1139
BspANI	GGCC	2 cut(s)	461, 974
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	1184
BspLI	GGNNCC	3 cut(s)	39, 57, 73
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	2 cut(s)	206, 214
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	3 cut(s)	32, 45, 1057
BspT107I	GGYRCC	2 cut(s)	55, 71
BsrFI	RCCGGY	2 cut(s)	68, 369
BsrI	ACTGG	1 cut(s)	1148
BssAI	RCCGGY	2 cut(s)	68, 369
BssECI	CCNNGG	2 cut(s)	506, 975
BssMI	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	506, 975
Bst4CI	ACNGT	3 cut(s)	55, 76, 747
Bst6I	CTCTTC	2 cut(s)	693, 780
BstACI	GRCGYC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	5 cut(s)	9, 347, 495, 730, 1110
BstDEI	CTNAG	4 cut(s)	580, 609, 1034, 1115
BstF5I	GGATG	2 cut(s)	132, 668
BstKTI	GATC	6 cut(s)	40, 364, 556, 634, 1033, 1052
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 351
BstNSI	RCATGY	2 cut(s)	86, 1112
BstSFI	CTRYAG	2 cut(s)	207, 743
BstV1I	GCAGC	2 cut(s)	477, 1092
BstV2I	GAAGAC	1 cut(s)	992
BstX2I	RGATCY	2 cut(s)	37, 1030
BstYI	RGATCY	2 cut(s)	37, 1030
BsuI	GTATCC	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	461, 974
BtgZI	GCGATG	1 cut(s)	564
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	132, 668
BtsIMutI	CAGTG	2 cut(s)	617, 1155
BveI	ACCTGC	2 cut(s)	206, 214
Cac8I	GCNNGC	5 cut(s)	9, 347, 495, 730, 1110
CaiI	CAGNNNCTG	2 cut(s)	682, 1142
CciI	TCATGA	1 cut(s)	1184
Cfr10I	RCCGGY	2 cut(s)	68, 369
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	3 cut(s)	83, 1109, 1185
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	4 cut(s)	580, 609, 1034, 1115
DpnI	GATC	6 cut(s)	39, 363, 555, 633, 1032, 1051
DpnII	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
DraI	TTTAAA	1 cut(s)	724
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	972
Eam1104I	CTCTTC	2 cut(s)	693, 780
EarI	CTCTTC	2 cut(s)	693, 780
Eco130I	CCWWGG	2 cut(s)	506, 975
Eco147I	AGGCCT	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	648, 822
EcoT14I	CCWWGG	2 cut(s)	506, 975
ErhI	CCWWGG	2 cut(s)	506, 975
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	86, 1112, 1188
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	3 cut(s)	544, 1101, 1130
FatI	CATG	3 cut(s)	82, 1108, 1184
FauI	CCCGC	2 cut(s)	569, 951
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	3 cut(s)	414, 529, 899
Fnu4HI	GCNGC	3 cut(s)	491, 1081, 1140
FokI	GGATG	2 cut(s)	119, 675
Fsp4HI	GCNGC	3 cut(s)	491, 1081, 1140
FspBI	CTAG	4 cut(s)	237, 494, 782, 1091
GluI	GCNGC	3 cut(s)	491, 1081, 1140
GsaI	CCCAGC	1 cut(s)	760
HaeIII	GGCC	2 cut(s)	461, 974
HapII	CCGG	3 cut(s)	35, 69, 370
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	86, 1112, 1188
HincII	GTYRAC	3 cut(s)	125, 530, 591
HindII	GTYRAC	3 cut(s)	125, 530, 591
HinfI	GANTC	6 cut(s)	31, 425, 471, 711, 937, 1153
HpaII	CCGG	3 cut(s)	35, 69, 370
HphI	GGTGA	3 cut(s)	230, 890, 1030
Hpy166II	GTNNAC	6 cut(s)	125, 400, 415, 530, 591, 900
Hpy188III	TCNNGA	3 cut(s)	35, 1028, 1185
Hpy8I	GTNNAC	6 cut(s)	125, 400, 415, 530, 591, 900
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	4 cut(s)	472, 512, 711, 978
HpyCH4III	ACNGT	3 cut(s)	55, 76, 747
HpyCH4IV	ACGT	2 cut(s)	100, 417
HpyCH4V	TGCA	7 cut(s)	7, 209, 279, 305, 641, 867, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 351
HpyF3I	CTNAG	4 cut(s)	580, 609, 1034, 1115
HpySE526I	ACGT	2 cut(s)	100, 417
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	86, 1112, 1188
Kpn2I	TCCGGA	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
LmnI	GCTCC	2 cut(s)	359, 620
Lsp1109I	GCAGC	2 cut(s)	477, 1092
LweI	GCATC	2 cut(s)	613, 874
MaeI	CTAG	4 cut(s)	237, 494, 782, 1091
MaeII	ACGT	2 cut(s)	100, 417
MaeIII	GTNAC	1 cut(s)	1150
MalI	GATC	6 cut(s)	39, 363, 555, 633, 1032, 1051
MboI	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
MflI	RGATCY	2 cut(s)	37, 1030
MhlI	GDGCHC	1 cut(s)	617
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	6 cut(s)	16, 572, 656, 672, 949, 1007
MluNI	TGGCCA	1 cut(s)	974
MlyI	GAGTC	4 cut(s)	25, 465, 720, 1147
MmeI	TCCRAC	3 cut(s)	53, 400, 771
Mox20I	TGGCCA	1 cut(s)	974
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	2 cut(s)	227, 936
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	3 cut(s)	119, 723, 1164
MslI	CAYNNNNRTG	2 cut(s)	1016, 1107
Msp20I	TGGCCA	1 cut(s)	974
MspA1I	CMGCKG	2 cut(s)	431, 1139
MspI	CCGG	3 cut(s)	35, 69, 370
MwoI	GCNNNNNNNGC	2 cut(s)	55, 351
NdeII	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	3 cut(s)	86, 1112, 1188
NlaIV	GGNNCC	3 cut(s)	39, 57, 73
NmuCI	GTSAC	1 cut(s)	1150
NspI	RCATGY	2 cut(s)	86, 1112
PaeI	GCATGC	1 cut(s)	1112
PagI	TCATGA	1 cut(s)	1184
PaqCI	CACCTGC	2 cut(s)	206, 214
PceI	AGGCCT	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	227, 936
PfeI	GAWTC	2 cut(s)	425, 937
PkrI	GCNGC	3 cut(s)	492, 1082, 1141
PleI	GAGTC	4 cut(s)	25, 465, 719, 1147
PpsI	GAGTC	4 cut(s)	25, 465, 719, 1147
PspFI	CCCAGC	1 cut(s)	756
PspN4I	GGNNCC	3 cut(s)	39, 57, 73
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	2 cut(s)	682, 1142
PsuI	RGATCY	2 cut(s)	37, 1030
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	2 cut(s)	1016, 1107
SalI	GTCGAC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	119, 723, 1164
SatI	GCNGC	3 cut(s)	491, 1081, 1140
Sau3AI	GATC	6 cut(s)	37, 361, 553, 631, 1030, 1049
SchI	GAGTC	4 cut(s)	25, 465, 720, 1147
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	2 cut(s)	613, 874
SfcI	CTRYAG	2 cut(s)	207, 743
SmiMI	CAYNNNNRTG	2 cut(s)	1016, 1107
SpeI	ACTAGT	1 cut(s)	1090
SphI	GCATGC	1 cut(s)	1112
Sse9I	AATT	6 cut(s)	16, 572, 656, 672, 949, 1007
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	5 cut(s)	319, 429, 562, 958, 1139
SspMI	CTAG	4 cut(s)	237, 494, 782, 1091
StuI	AGGCCT	1 cut(s)	461
StyI	CCWWGG	2 cut(s)	506, 975
TaaI	ACNGT	3 cut(s)	55, 76, 747
TaiI	ACGT	2 cut(s)	103, 420
TaqI	TCGA	2 cut(s)	435, 529
TasI	AATT	6 cut(s)	16, 572, 656, 672, 949, 1007
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	2 cut(s)	425, 937
Tru1I	TTAA	3 cut(s)	119, 723, 1164
Tru9I	TTAA	3 cut(s)	119, 723, 1164
TscAI	CASTG	2 cut(s)	617, 1155
TseFI	GTSAC	1 cut(s)	1150
TseI	GCWGC	2 cut(s)	490, 1080
Tsp45I	GTSAC	1 cut(s)	1150
TspDTI	ATGAA	6 cut(s)	9, 121, 188, 192, 454, 1000
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	617, 1155
XapI	RAATTY	2 cut(s)	572, 656
XceI	RCATGY	2 cut(s)	86, 1112
XmiI	GTMKAC	3 cut(s)	414, 529, 899
XmnI	GAANNNNTTC	2 cut(s)	227, 936
XspI	CTAG	4 cut(s)	237, 494, 782, 1091
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.