Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Reverse (-)

10134348 .. 10136678

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G171500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGAAGTGTGGTGGTCCCTGTTAGCCGCTATCCCTGCAGTGGTTGCAGGACAAGCAATTCGAGTGAAGAAAAGGCGTGCGGAAGAGGAGAGAATAAAGAGTGCTAGAGGGAGGGAGAAGAGTTCCGATGAAATTTTTGTATGTGAGAGGGTGTGCACATCGAAGAGAATGCTGAAAAAGGTTGGTGCATTCTCAAAGGACCCAATTCCTGATACTTGTGTCACTGTCTGCGGTGTATCTGAGCTCGATGCCTGCGCGGATGCATGCGCGCGGACGGTTTGTGTAAACCAGCATCAAGTACCAAACTGGAATGACATCTGCCTTAGAAGATGCCAGAGTGAATGCTTGAAACTCTCATCCTCAAGTTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

8.74

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	260, 272, 274
AciI	CCGC	5 cut(s)	30, 83, 234, 260, 274
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	2 cut(s)	161, 249
Alw44I	GTGCAC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspLEI	GCGC	3 cut(s)	260, 272, 274
AspS9I	GGNCC	2 cut(s)	18, 202
AvaII	GGWCC	2 cut(s)	18, 202
BaeGI	GKGCMC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	161, 249
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	18, 202
BmgT120I	GGNCC	2 cut(s)	18, 202
BmiI	GGNNCC	2 cut(s)	20, 204
BmsI	GCATC	4 cut(s)	241, 253, 304, 323
BpuEI	CTTGAG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	268, 359
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	314
BsePI	GCGCGC	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	161
Bsh1236I	CGCG	3 cut(s)	260, 272, 274
BsiHKAI	GWGCWC	2 cut(s)	161, 249
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	3 cut(s)	177, 191, 350
Bsp1286I	GDGCHC	2 cut(s)	161, 249
BspACI	CCGC	5 cut(s)	30, 83, 234, 260, 274
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	3 cut(s)	260, 272, 274
BspLI	GGNNCC	2 cut(s)	20, 204
BspMAI	CTGCAG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	314
BssHII	GCGCGC	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	229, 280
Bst6I	CTCTTC	3 cut(s)	81, 116, 161
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstC8I	GCNNGC	4 cut(s)	81, 256, 268, 272
BstDEI	CTNAG	2 cut(s)	243, 326
BstF5I	GGATG	2 cut(s)	268, 359
BstFNI	CGCG	3 cut(s)	260, 272, 274
BstHHI	GCGC	3 cut(s)	260, 272, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	3 cut(s)	260, 272, 274
BtsCI	GGATG	2 cut(s)	268, 359
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 225
Cac8I	GCNNGC	4 cut(s)	81, 256, 268, 272
CfoI	GCGC	3 cut(s)	260, 272, 274
Cfr13I	GGNCC	2 cut(s)	18, 202
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	2 cut(s)	29, 247
CviKI_1	RGCY	2 cut(s)	29, 247
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	243, 326
Eam1104I	CTCTTC	3 cut(s)	81, 116, 161
EarI	CTCTTC	3 cut(s)	81, 116, 161
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	18, 202
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	270
FaiI	YATR	2 cut(s)	145, 268
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	275, 346
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	3 cut(s)	259, 271, 273
GluI	GCNGC	1 cut(s)	30
HhaI	GCGC	3 cut(s)	260, 272, 274
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	3 cut(s)	258, 270, 272
HinP1I	GCGC	3 cut(s)	258, 270, 272
Hpy166II	GTNNAC	2 cut(s)	159, 289
Hpy188I	TCNGA	2 cut(s)	130, 244
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	159, 289
HpyCH4III	ACNGT	2 cut(s)	229, 280
HpyCH4V	TGCA	5 cut(s)	41, 50, 159, 191, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
HpyF3I	CTNAG	2 cut(s)	243, 326
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	3 cut(s)	258, 270, 272
LpnPI	CCDG	8 cut(s)	35, 36, 51, 225, 268, 295, 305, 350
LweI	GCATC	4 cut(s)	241, 253, 304, 323
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	5 cut(s)	82, 98, 133, 178, 342
MhlI	GDGCHC	2 cut(s)	161, 249
MluCI	AATT	3 cut(s)	60, 135, 207
MnlI	CCTC	5 cut(s)	82, 104, 108, 144, 373
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	1 cut(s)	376
Mva1269I	GAATGC	3 cut(s)	177, 191, 350
MvnI	CGCG	3 cut(s)	260, 272, 274
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	2 cut(s)	20, 204
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PauI	GCGCGC	1 cut(s)	270
PctI	GAATGC	3 cut(s)	177, 191, 350
PkrI	GCNGC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	20, 204
PspPI	GGNCC	2 cut(s)	18, 202
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	43
PteI	GCGCGC	1 cut(s)	270
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	18, 202
SduI	GDGCHC	2 cut(s)	161, 249
SetI	ASST	2 cut(s)	186, 249
SfaNI	GCATC	4 cut(s)	241, 253, 304, 323
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 202
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	3 cut(s)	60, 135, 207
SsiI	CCGC	5 cut(s)	30, 83, 234, 260, 274
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	229, 280
TaqI	TCGA	3 cut(s)	64, 164, 249
TasI	AATT	3 cut(s)	60, 135, 207
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	2 cut(s)	48, 232
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	48, 232
VneI	GTGCAC	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	18, 202
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.