Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Reverse (-)

30297047 .. 30298899

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTTAGCGGTAGTTTTCTCAATCTCTCTCTCTCAAAGTCTCAAACTTTGAAATTCCCAAAACCCTTTGGGGAGTGGAGCTCACAGATCGCCTTGTATTCCAGGTTCATTGTCTTTCTGTATCTGTTAAAGACTGCTGCAGAAGAGATTGACCTTGCATTGGTGATGGTGGATGCGTGGTGGTCCCTGTTAGCTGCTATCCCTGCAGTGGTTGCAGGACAAGCATATCGGGTCAAGAAAAGGCGCGCTGAAGAGCAGAGATTAAAGAGTGCTAGGGGAAGGGAGAAGAGTTCTGATGAGATTTTTGTCTGTGAGAGGGTATGCACATCAAAGAGAATGCTCAAAAAGGTAGGTGCATTCTCAAAGGACCCTATTCCTGATACGTGTGTTACTGTATGTGGTGTCTCTGAGCTCGATGCATGCGCTGATGCATGTGCGCGCACTGTTTGCGTGAACCAACACCAAGTGCCCAACTGGAATGACATCTGCCTTCGGAGATGCCAGAGTGAATGTCTAAAACTCTCTTCCTCCAGTTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.04

Weight (kDa)

8.95

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	246, 439
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	160, 208
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	81, 194, 412
AluI	AGCT	3 cut(s)	81, 194, 412
Alw21I	GWGCWC	2 cut(s)	83, 414
Alw26I	GTCTC	2 cut(s)	45, 409
ApeKI	GCWGC	2 cut(s)	137, 194
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	5 cut(s)	246, 248, 425, 439, 441
AspS9I	GGNCC	2 cut(s)	183, 367
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	183, 367
BaeGI	GKGCMC	1 cut(s)	471
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanII	GRGCYC	2 cut(s)	83, 414
Bbv12I	GWGCWC	2 cut(s)	83, 414
BbvI	GCAGC	2 cut(s)	124, 181
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	45, 409
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	2 cut(s)	138, 204
BisI	GCNGC	2 cut(s)	138, 195
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	139, 196
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	183, 367
BmgT120I	GGNCC	2 cut(s)	183, 367
BmiI	GGNNCC	2 cut(s)	185, 369
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	4 cut(s)	163, 406, 418, 488
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaAI	YACGTR	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 208
Bse1I	ACTGG	2 cut(s)	479, 531
BseBI	CCWGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	160, 208
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	479, 531
BsePI	GCGCGC	2 cut(s)	244, 437
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	124, 181
Bsh1236I	CGCG	2 cut(s)	246, 439
BsiHKAI	GWGCWC	2 cut(s)	83, 414
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	160, 208
BsmAI	GTCTC	2 cut(s)	45, 409
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	342, 356
Bsp1286I	GDGCHC	3 cut(s)	83, 414, 471
Bsp143I	GATC	1 cut(s)	87
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	246, 439
BspLI	GGNNCC	2 cut(s)	185, 369
BspMAI	CTGCAG	2 cut(s)	142, 208
BspQI	GCTCTTC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	479, 531
BssHII	GCGCGC	2 cut(s)	244, 437
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	394, 445
Bst6I	CTCTTC	4 cut(s)	138, 246, 281, 529
BstAPI	GCANNNNNTGC	2 cut(s)	212, 447
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	246, 421, 439
BstDEI	CTNAG	2 cut(s)	5, 408
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	246, 439
BstHHI	GCGC	5 cut(s)	246, 248, 425, 439, 441
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	45, 409
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 212, 221, 447
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	2 cut(s)	423, 435
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	138, 204
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	2 cut(s)	246, 439
BstV1I	GCAGC	2 cut(s)	124, 181
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 441
Cac8I	GCNNGC	3 cut(s)	246, 421, 439
CfoI	GCGC	5 cut(s)	246, 248, 425, 439, 441
Cfr13I	GGNCC	2 cut(s)	183, 367
CviAII	CATG	2 cut(s)	420, 432
CviJI	RGCY	3 cut(s)	81, 194, 412
CviKI_1	RGCY	3 cut(s)	81, 194, 412
DdeI	CTNAG	2 cut(s)	5, 408
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraIII	CACNNNGTG	1 cut(s)	466
Eam1104I	CTCTTC	4 cut(s)	138, 246, 281, 529
EarI	CTCTTC	4 cut(s)	138, 246, 281, 529
Ecl136II	GAGCTC	2 cut(s)	81, 412
Eco24I	GRGCYC	2 cut(s)	83, 414
Eco47I	GGWCC	2 cut(s)	183, 367
Eco53kI	GAGCTC	2 cut(s)	81, 412
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	2 cut(s)	81, 412
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	101
EcoT22I	ATGCAT	2 cut(s)	421, 433
EcoT38I	GRGCYC	2 cut(s)	83, 414
FaeI	CATG	2 cut(s)	423, 435
FaiI	YATR	5 cut(s)	226, 322, 397, 421, 433
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	419, 431
Fnu4HI	GCNGC	2 cut(s)	138, 195
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	2 cut(s)	83, 414
Fsp4HI	GCNGC	2 cut(s)	138, 195
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	5 cut(s)	245, 247, 424, 438, 440
GluI	GCNGC	2 cut(s)	138, 195
GsuI	CTGGAG	1 cut(s)	514
HhaI	GCGC	5 cut(s)	246, 248, 425, 439, 441
Hin1II	CATG	2 cut(s)	423, 435
Hin6I	GCGC	5 cut(s)	244, 246, 423, 437, 439
HinP1I	GCGC	5 cut(s)	244, 246, 423, 437, 439
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	295, 409, 495
Hpy188III	TCNNGA	2 cut(s)	235, 377
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	2 cut(s)	273, 500
HpyCH4III	ACNGT	2 cut(s)	394, 445
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	8 cut(s)	140, 158, 206, 215, 324, 356, 419, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 212, 221, 447
HpyF3I	CTNAG	2 cut(s)	5, 408
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	423, 435
HspAI	GCGC	5 cut(s)	244, 246, 423, 437, 439
Kzo9I	GATC	1 cut(s)	87
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	88, 115, 200, 201, 216, 390, 460, 515
Lsp1109I	GCAGC	2 cut(s)	124, 181
LweI	GCATC	4 cut(s)	163, 406, 418, 488
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	5 cut(s)	155, 263, 298, 516, 528
MhlI	GDGCHC	3 cut(s)	83, 414, 471
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	2 cut(s)	309, 538
Mph1103I	ATGCAT	2 cut(s)	421, 433
MseI	TTAA	2 cut(s)	128, 263
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	2 cut(s)	342, 356
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	246, 439
MwoI	GCNNNNNNNGC	4 cut(s)	203, 212, 221, 447
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	423, 435
NlaIV	GGNNCC	2 cut(s)	185, 369
NsiI	ATGCAT	2 cut(s)	421, 433
NspI	RCATGY	2 cut(s)	423, 435
PaeI	GCATGC	1 cut(s)	423
PauI	GCGCGC	2 cut(s)	244, 437
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	2 cut(s)	342, 356
PkrI	GCNGC	2 cut(s)	139, 196
Ppu21I	YACGTR	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	367
Psp124BI	GAGCTC	2 cut(s)	83, 414
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	185, 369
PspPI	GGNCC	2 cut(s)	183, 367
PspPPI	RGGWCCY	1 cut(s)	367
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PstI	CTGCAG	2 cut(s)	142, 208
PteI	GCGCGC	2 cut(s)	244, 437
SacI	GAGCTC	2 cut(s)	83, 414
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	128, 263
SatI	GCNGC	2 cut(s)	138, 195
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	183, 367
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	83, 414, 471
SetI	ASST	8 cut(s)	83, 107, 156, 196, 351, 355, 386, 414
SfaNI	GCATC	4 cut(s)	163, 406, 418, 488
SfcI	CTRYAG	2 cut(s)	138, 204
SinI	GGWCC	2 cut(s)	183, 367
SphI	GCATGC	1 cut(s)	423
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	2 cut(s)	83, 414
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	394, 445
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	414
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	128, 263
Tru9I	TTAA	2 cut(s)	128, 263
TscAI	CASTG	2 cut(s)	213, 448
TseI	GCWGC	2 cut(s)	137, 194
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	213, 448
VpaK11BI	GGWCC	2 cut(s)	183, 367
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	2 cut(s)	423, 435
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	2 cut(s)	421, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.