Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005024

Physical Location & Seq

Genomic Coordinates Forward (+)

25819894 .. 25820271

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGAAGTGTGGTGGTCCCTATTGGCCGCTATCCCTGCAGTAGTTGCAGGACAAGCGTTTCGAGTGAAGAAAAGGCGTGGCGAAGAGCAGAGATTAAAGAGCGCTAGAGGGAGGGAGAAGAGTTCTGATGAGATTTTTGTCTGCGAAAGGGTATGCACGTCGAAGAGAATGCTGAAAAAGGTTGGTGCATTCTCAAAGGACCCTATTCCTGATACTTGTGTTACCGTCTGCGGTGTATCTGAGCTCGATGCGTGTGCTGATGCGTGTGCCCGCACTGTCTGCGTAAACCAACATCAAGTACCGAATTGGAACGACATCTGCCTTCGGAGATGCCAGAGTGAGTGTTTGAAACTCTCTTCTTCAGATCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

8.74

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64816 AT5G64816 AT5G64816 AT5G64816
fragaria_vesca	FvH4_1g22770
malus_domestica	MD15G1331400.v1.1 MD15G1340400.v1.1
prunus_persica	Prupe.4G171500_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1 Prupe.6G170300_v2.0.a1
pyrus_communis	pycom03g18380 pycom11g22800 pycom15g29360
rosa_chinensis	RchiOBHm_Chr2g0117091
rosa_laevigata	RLG00000018328
rosa_multiflora	Rmu_sc0027521.1_g000004
rosa_roxburghii	Rroxscaffold_2G00126720
rosa_rugosa	Rorug02G0210200 Rorug02G0210300 Rorug02G0210400 Rorug05G0127100
rosa_samantha	Rh2AG266100 Rh2BG278100 Rh2DG273300 Rh2DG292400 Rh5AG220800 Rh5CG243700
rosa_wichuraiana	Rw2G021000 Rw5G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 234, 274
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	303
AfeI	AGCGCT	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	352
AjiI	CACGTC	1 cut(s)	162
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	18, 202
AvaII	GGWCC	2 cut(s)	18, 202
BaeGI	GKGCMC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 239, 273
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	18, 202
BmgBI	CACGTC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	18, 202
BmiI	GGNNCC	2 cut(s)	20, 204
BmsI	GCATC	3 cut(s)	241, 253, 323
BseMII	CTCAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	2 cut(s)	177, 191
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	249, 274
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	3 cut(s)	30, 234, 274
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	20, 204
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	81
BssMI	GATC	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	229, 280
Bst6I	CTCTTC	4 cut(s)	81, 116, 161, 364
BstAPI	GCANNNNNTGC	2 cut(s)	47, 282
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	18, 202
Csp6I	GTAC	1 cut(s)	302
CviJI	RGCY	2 cut(s)	29, 247
CviKI_1	RGCY	2 cut(s)	29, 247
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	4 cut(s)	81, 116, 161, 364
EarI	CTCTTC	4 cut(s)	81, 116, 161, 364
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	18, 202
Eco47III	AGCGCT	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	249
FaiI	YATR	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	4
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	130, 244, 330, 367
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	229, 280
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	41, 50, 159, 191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	161
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	4 cut(s)	36, 51, 225, 350
LweI	GCATC	3 cut(s)	241, 253, 323
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	6 cut(s)	82, 98, 133, 178, 351, 354
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	249, 274
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	2 cut(s)	104, 108
MseI	TTAA	2 cut(s)	98, 376
Mva1269I	GAATGC	2 cut(s)	177, 191
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
NdeII	GATC	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	20, 204
PciSI	GCTCTTC	1 cut(s)	81
PctI	GAATGC	2 cut(s)	177, 191
PkrI	GCNGC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	20, 204
PspPI	GGNCC	2 cut(s)	18, 202
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	98, 376
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	18, 202
SduI	GDGCHC	2 cut(s)	249, 274
SetI	ASST	3 cut(s)	164, 186, 249
SfaNI	GCATC	3 cut(s)	241, 253, 323
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 202
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	30, 234, 274
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	229, 280
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	3 cut(s)	64, 164, 249
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	98, 376
Tru9I	TTAA	2 cut(s)	98, 376
TscAI	CASTG	1 cut(s)	283
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	18, 202
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.