FvH4_1g24780

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008445
Physical Location & Seq
Forward (+)
16576348 .. 16578006
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24780.t1

Sequence Viewer

Length: 384 bp
ATGGGTTCACTTTCAACAATGGCGTCCATGGAAAATTCTCGCGATTTCATGTTCTGCAACATCTGTGGGACTATGCTATCTTTTACTAGAACTCTTTATGCTGAACCCGGCCAATGTCCCAAGTGCAAATTTTCCCGACCTATAAAAGAGCTCTCCAAATATAAAATATCGTACACGGTCAGTAAAGAGGATATTCAAAGGGAGCTAGGCATATCAAAGATTAAAGAGGAAAAGACTGAATTGGCAAAGACGGACATGAAAAAATGTGAAAAGTGTGGCCACAATGAGCATACATATTTTTCTAGACAGATGAGATCAGCTGATGAGGGGGCAACTACTTTCTACACTTGCACCAAATGCAATAATAGTTTTAGTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
TFIIS_C

Protein Analysis

128

Amino Acids

14.57

Weight (kDa)

8.6

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_TFIIS PF01096 87 - 124 3.3e-17 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AcoI YGGCCR 2 cut(s) 109, 277
AcsI RAATTY 2 cut(s) 34, 128
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 2 cut(s) 15, 197
AluBI AGCT 3 cut(s) 151, 205, 320
AluI AGCT 3 cut(s) 151, 205, 320
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 2 cut(s) 109, 277
ApoI RAATTY 2 cut(s) 34, 128
AsuC2I CCSGG 1 cut(s) 108
BalI TGGCCA 1 cut(s) 279
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 3 cut(s) 87, 206, 303
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 111, 279
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 2 cut(s) 82, 102
BsmFI GGGAC 2 cut(s) 82, 102
BsnI GGCC 2 cut(s) 111, 279
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 27
Bsp68I TCGCGA 1 cut(s) 42
BspANI GGCC 2 cut(s) 111, 279
BspFNI CGCG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 111, 279
BtgI CCRYGG 1 cut(s) 27
BtuMI TCGCGA 1 cut(s) 42
CseI GACGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 3 cut(s) 28, 49, 256
CviJI RGCY 5 cut(s) 111, 151, 205, 279, 320
CviKI_1 RGCY 5 cut(s) 111, 151, 205, 279, 320
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 109, 277
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 31, 52, 259
FaqI GGGAC 2 cut(s) 82, 102
FatI CATG 3 cut(s) 27, 48, 255
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 3 cut(s) 87, 206, 303
HaeIII GGCC 2 cut(s) 111, 279
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 31, 52, 259
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 8, 174
Hpy188III TCNNGA 3 cut(s) 41, 135, 303
Hpy8I GTNNAC 2 cut(s) 8, 174
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 57, 126, 351, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 31, 52, 259
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 1 cut(s) 121
MaeI CTAG 3 cut(s) 87, 206, 303
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 4 cut(s) 34, 128, 239, 379
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 3 cut(s) 181, 220, 319
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 2 cut(s) 222, 382
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 314
NlaIII CATG 3 cut(s) 31, 52, 259
NruI TCGCGA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 320
RruI TCGCGA 1 cut(s) 42
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 222, 382
Sau3AI GATC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 142, 153, 207, 322
Sse9I AATT 4 cut(s) 34, 128, 239, 379
SspMI CTAG 3 cut(s) 87, 206, 303
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 178
TasI AATT 4 cut(s) 34, 128, 239, 379
Tru1I TTAA 2 cut(s) 222, 382
Tru9I TTAA 2 cut(s) 222, 382
TspDTI ATGAA 2 cut(s) 37, 272
TspGWI ACGGA 1 cut(s) 266
XapI RAATTY 2 cut(s) 34, 128
XbaI TCTAGA 1 cut(s) 302
XspI CTAG 3 cut(s) 87, 206, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.