Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008445

Physical Location & Seq

Genomic Coordinates Forward (+)

466578 .. 467865

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCGTAAAGCTCCAACTGCAGGTGCAACAACGATATCTAACGGTGCATCGGAGAAGCATTTCATGGCATACTCTCAAGGCCGCAATTTCTTGTTCTGCGACTTGTGTGGGAGTTTGCTAAATTTGAATTCAAATAAGTATGCTCAATGCCCTCTCTGCAAGTTACAGCGAAATGTGAAAGAGATATCCGGAAGAGAAATATCTTACAAAGTCACTGCTGAGGATATTAGAAGAGATCTAGGCATATCAATAATTCCAGAAGAGAAGGTGCAATTGCAAAAGACAGATGCTAAAACATGTGAAAAATGCGGCCACAATGAGCATACATATTACTCCCGACAGATGAGATCGGCAGATGAAGGGGCAACTACTTTCTATGTGTGCACCAATTGCCAGCACCAGTTTACTGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

TFIIS_C

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

8.41

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT3G25940
fragaria_vesca	FvH4_1g24780
malus_domestica	MD08G1010500.v1.1 MD15G1010600.v1.1
prunus_persica	Prupe.6G147400_v2.0.a1
pyrus_communis	pycom08g00890 pycom15g00880
rosa_chinensis	RchiOBHm_Chr2g0124111
rosa_laevigata	RLG00000018781
rosa_multiflora	Rmu_sc0002933.1_g000004 Rmu_sc0008812.1_g000011
rosa_roxburghii	Rroxscaffold_2G00120120
rosa_rugosa	Rorug02G0248600
rosa_samantha	Rh2AG307500 Rh2BG316600 Rh2CG294300 Rh2DG331300
rosa_wichuraiana	Rw2G024790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	2 cut(s)	82, 309
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	121, 127
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	127, 132
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	382
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	2 cut(s)	79, 310
ApaLI	GTGCAC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	121, 127
Asp700I	GAANNNNTTC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	2 cut(s)	82, 310
BlsI	GCNGC	2 cut(s)	83, 311
BmsI	GCATC	2 cut(s)	56, 277
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	210, 399
BseNI	ACTGG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	386
BshFI	GGCC	2 cut(s)	81, 312
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	20
BsnI	GGCC	2 cut(s)	81, 312
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	235, 347
BspACI	CCGC	2 cut(s)	82, 309
BspANI	GGCC	2 cut(s)	81, 312
BspCNI	CTCAG	2 cut(s)	211, 400
BspEI	TCCGGA	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	235, 347
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	187, 226, 255
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	219, 408
BstKTI	GATC	2 cut(s)	238, 350
BstMBI	GATC	2 cut(s)	235, 347
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 156, 390
BstNSI	RCATGY	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	81, 312
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	395
CviAII	CATG	2 cut(s)	64, 297
CviJI	RGCY	3 cut(s)	11, 81, 312
CviKI_1	RGCY	3 cut(s)	11, 81, 312
DdeI	CTNAG	2 cut(s)	219, 408
DpnI	GATC	2 cut(s)	237, 349
DpnII	GATC	2 cut(s)	235, 347
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	187, 226, 255
EarI	CTCTTC	3 cut(s)	187, 226, 255
Eco32I	GATATC	2 cut(s)	36, 186
EcoRI	GAATTC	1 cut(s)	127
EcoRV	GATATC	2 cut(s)	36, 186
FaeI	CATG	2 cut(s)	67, 300
FaiI	YATR	8 cut(s)	65, 70, 141, 245, 298, 324, 328, 378
FatI	CATG	2 cut(s)	63, 296
Fnu4HI	GCNGC	2 cut(s)	82, 310
Fsp4HI	GCNGC	2 cut(s)	82, 310
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	2 cut(s)	82, 310
HaeIII	GGCC	2 cut(s)	81, 312
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	67, 300
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	384, 405
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	189, 257, 336
Hpy8I	GTNNAC	2 cut(s)	384, 405
HpyAV	CCTTC	2 cut(s)	259, 353
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	20, 26, 47, 159, 271, 277, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 156, 390
HpyF3I	CTNAG	2 cut(s)	219, 408
Hsp92II	CATG	2 cut(s)	67, 300
Kpn2I	TCCGGA	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	235, 347
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	6, 202, 270, 407, 413
LweI	GCATC	2 cut(s)	56, 277
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	162, 211
MalI	GATC	2 cut(s)	237, 349
MboI	GATC	2 cut(s)	235, 347
MboII	GAAGA	3 cut(s)	204, 243, 272
MfeI	CAATTG	2 cut(s)	272, 388
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	7 cut(s)	85, 121, 127, 252, 272, 388, 412
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	162, 214
MroI	TCCGGA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	59
MspI	CCGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	272, 388
MwoI	GCNNNNNNNGC	3 cut(s)	17, 156, 390
NdeII	GATC	2 cut(s)	235, 347
NlaIII	CATG	2 cut(s)	67, 300
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	11
PciI	ACATGT	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	83, 311
PscI	ACATGT	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	235
SatI	GCNGC	2 cut(s)	82, 310
Sau3AI	GATC	2 cut(s)	235, 347
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	3 cut(s)	13, 25, 270
SfaNI	GCATC	2 cut(s)	56, 277
SfcI	CTRYAG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	7 cut(s)	85, 121, 127, 252, 272, 388, 412
SsiI	CCGC	2 cut(s)	82, 309
SspMI	CTAG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	44
TasI	AATT	7 cut(s)	85, 121, 127, 252, 272, 388, 412
TauI	GCSGC	2 cut(s)	84, 312
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	52, 372
TspRI	CASTG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	121, 127
XceI	RCATGY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.