Rh2CG294300

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008445
Physical Location & Seq
Reverse (-)
33653032 .. 33660047
7016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG294300.1

Sequence Viewer

Length: 402 bp
ATGTTAGTGCAGCAGCTGCATCAGGTTTTACTTTCAACAATGTCGTCCATGTCAGAGCCTCGTGGTTTCCTGTTCTGCAACAGCTGTGGGTATATGCTATCTTTGACAACTCATTATGCTAAACCTGGCCGATGCCCCTATTGCGAACACCCACGACCTACAGAAGGGCTCTCTAAATGTAAATATTCGTACACAGTCAGTAAAGAGGATATTCAAAGGGAGTTAGGCAAATCAACAATTAAGGAGGAAAAGACTGAATTGGCAAAGACGGATATGAAAAAATGTGAAAAGTGTGGCCACAATGAGCATACATATTTTTCTAGACAGATGAGATCAGCTGATGAGGGGGCAACTACTTTCTACACTTGCACCAAGTGCAATAATAGTTTCAGTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
TFIIS_C

Protein Analysis

133

Amino Acids

15.24

Weight (kDa)

8.35

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_TFIIS PF01096 93 - 130 3.6e-17 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 127, 295
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 36, 215
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 3 cut(s) 16, 84, 338
AluI AGCT 3 cut(s) 16, 84, 338
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 127, 295
ApeKI GCWGC 3 cut(s) 10, 13, 16
BalI TGGCCA 1 cut(s) 297
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 60
BbvI GCAGC 3 cut(s) 3, 22, 25
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 3 cut(s) 11, 14, 17
BlsI GCNGC 3 cut(s) 12, 15, 18
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 2 cut(s) 28, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 3, 22, 25
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 2 cut(s) 129, 297
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 2 cut(s) 129, 297
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 332
BspANI GGCC 2 cut(s) 129, 297
BssMI GATC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 2 cut(s) 16, 375
BstENI CCTNNNNNAGG 1 cut(s) 162
BstKTI GATC 1 cut(s) 335
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 16, 141, 375
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 3, 22, 25
BsuRI GGCC 2 cut(s) 129, 297
BtsIMutI CAGTG 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 1 cut(s) 49
CviJI RGCY 7 cut(s) 16, 58, 84, 129, 169, 297, 338
CviKI_1 RGCY 7 cut(s) 16, 58, 84, 129, 169, 297, 338
CviQI GTAC 1 cut(s) 190
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraIII CACNNNGTG 1 cut(s) 375
EaeI YGGCCR 2 cut(s) 127, 295
Eco24I GRGCYC 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 1 cut(s) 52
FaiI YATR 7 cut(s) 50, 93, 95, 117, 275, 309, 313
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 11, 14, 17
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 11, 14, 17
FspBI CTAG 1 cut(s) 321
GluI GCNGC 3 cut(s) 11, 14, 17
HaeIII GGCC 2 cut(s) 129, 297
Hin1II CATG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 10, 19, 78, 369, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 141, 375
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 1 cut(s) 332
LpnPI CCDG 4 cut(s) 8, 83, 111, 138
Lsp1109I GCAGC 3 cut(s) 3, 22, 25
LweI GCATC 2 cut(s) 28, 122
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 3 cut(s) 237, 257, 397
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 4 cut(s) 69, 199, 238, 337
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MseI TTAA 2 cut(s) 240, 400
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 3 cut(s) 16, 84, 338
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 16, 141, 375
NdeII GATC 1 cut(s) 332
NlaIII CATG 1 cut(s) 52
PkrI GCNGC 3 cut(s) 12, 15, 18
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 16
PvuII CAGCTG 3 cut(s) 16, 84, 338
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 240, 400
SatI GCNGC 3 cut(s) 11, 14, 17
Sau3AI GATC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 18, 27, 86, 127, 160, 340
SfaNI GCATC 2 cut(s) 28, 122
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 3 cut(s) 237, 257, 397
SspI AATATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 196
TasI AATT 3 cut(s) 237, 257, 397
Tru1I TTAA 2 cut(s) 240, 400
Tru9I TTAA 2 cut(s) 240, 400
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 10, 13, 16
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 397
XagI CCTNNNNNAGG 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 320
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.