DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT3G25940 |
| fragaria_vesca | FvH4_1g24780 |
| malus_domestica | MD08G1010500.v1.1 MD15G1010600.v1.1 |
| prunus_persica | Prupe.6G147400_v2.0.a1 |
| pyrus_communis | pycom08g00890 pycom15g00880 |
| rosa_chinensis | RchiOBHm_Chr2g0124111 |
| rosa_laevigata | RLG00000018781 |
| rosa_multiflora | Rmu_sc0002933.1_g000004 Rmu_sc0008812.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00120120 |
| rosa_rugosa | Rorug02G0248600 |
| rosa_samantha | Rh2AG307500 Rh2BG316600 Rh2CG294300 Rh2DG331300 |
| rosa_wichuraiana | Rw2G024790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 109 |
| AciI | CCGC | 1 cut(s) | 107 |
| AclWI | GGATC | 1 cut(s) | 410 |
| AcoI | YGGCCR | 2 cut(s) | 82, 250 |
| AdeI | CACNNNGTG | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AgsI | TTSAA | 2 cut(s) | 170, 453 |
| AjnI | CCWGG | 1 cut(s) | 79 |
| AluBI | AGCT | 5 cut(s) | 36, 178, 293, 428, 533 |
| AluI | AGCT | 5 cut(s) | 36, 178, 293, 428, 533 |
| Alw26I | GTCTC | 1 cut(s) | 15 |
| AlwI | GGATC | 1 cut(s) | 410 |
| AoxI | GGCC | 3 cut(s) | 82, 250, 369 |
| ApeKI | GCWGC | 1 cut(s) | 425 |
| BalI | TGGCCA | 1 cut(s) | 252 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 358, 390 |
| BauI | CACGAG | 1 cut(s) | 12 |
| BbvI | GCAGC | 1 cut(s) | 437 |
| BccI | CCATC | 1 cut(s) | 111 |
| BciT130I | CCWGG | 1 cut(s) | 81 |
| BclI | TGATCA | 1 cut(s) | 430 |
| BcoDI | GTCTC | 1 cut(s) | 15 |
| BfaI | CTAG | 3 cut(s) | 179, 276, 384 |
| BfmI | CTRYAG | 1 cut(s) | 114 |
| BisI | GCNGC | 1 cut(s) | 426 |
| BlsI | GCNGC | 1 cut(s) | 427 |
| Bme1390I | CCNGG | 1 cut(s) | 81 |
| BmrFI | CCNGG | 1 cut(s) | 81 |
| BmsI | GCATC | 2 cut(s) | 77, 511 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 49, 79 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 398 |
| BseBI | CCWGG | 1 cut(s) | 81 |
| BseGI | GGATG | 1 cut(s) | 103 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseNI | ACTGG | 1 cut(s) | 398 |
| BseXI | GCAGC | 1 cut(s) | 437 |
| Bsh1236I | CGCG | 1 cut(s) | 109 |
| BshFI | GGCC | 3 cut(s) | 84, 252, 371 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 15 |
| BsnI | GGCC | 3 cut(s) | 84, 252, 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 126 |
| Bsp143I | GATC | 4 cut(s) | 287, 357, 402, 430 |
| BspACI | CCGC | 1 cut(s) | 107 |
| BspANI | GGCC | 3 cut(s) | 84, 252, 371 |
| BspFNI | CGCG | 1 cut(s) | 109 |
| BspPI | GGATC | 1 cut(s) | 410 |
| BsrI | ACTGG | 1 cut(s) | 398 |
| BssMI | GATC | 4 cut(s) | 287, 357, 402, 430 |
| BssSI | CACGAG | 1 cut(s) | 12 |
| Bst2BI | CACGAG | 1 cut(s) | 12 |
| Bst2UI | CCWGG | 1 cut(s) | 81 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 499 |
| Bst6I | CTCTTC | 1 cut(s) | 379 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 117 |
| BstF5I | GGATG | 1 cut(s) | 103 |
| BstFNI | CGCG | 1 cut(s) | 109 |
| BstKTI | GATC | 4 cut(s) | 290, 360, 405, 433 |
| BstMAI | GTCTC | 1 cut(s) | 15 |
| BstMBI | GATC | 4 cut(s) | 287, 357, 402, 430 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 96, 330, 422, 446, 530 |
| BstNI | CCWGG | 1 cut(s) | 81 |
| BstSCI | CCNGG | 1 cut(s) | 79 |
| BstSFI | CTRYAG | 1 cut(s) | 114 |
| BstUI | CGCG | 1 cut(s) | 109 |
| BstV1I | GCAGC | 1 cut(s) | 437 |
| BsuRI | GGCC | 3 cut(s) | 84, 252, 371 |
| BtsCI | GGATG | 1 cut(s) | 103 |
| CviAII | CATG | 3 cut(s) | 229, 434, 540 |
| CviJI | RGCY | 9 cut(s) | 36, 84, 124, 178, 252, 293, 371, 428, 533 |
| CviKI_1 | RGCY | 9 cut(s) | 36, 84, 124, 178, 252, 293, 371, 428, 533 |
| DpnI | GATC | 4 cut(s) | 289, 359, 404, 432 |
| DpnII | GATC | 4 cut(s) | 287, 357, 402, 430 |
| DraIII | CACNNNGTG | 1 cut(s) | 330 |
| EaeI | YGGCCR | 2 cut(s) | 82, 250 |
| Eam1104I | CTCTTC | 1 cut(s) | 379 |
| EarI | CTCTTC | 1 cut(s) | 379 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 79 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaeI | CATG | 3 cut(s) | 232, 437, 543 |
| FatI | CATG | 3 cut(s) | 228, 433, 539 |
| FbaI | TGATCA | 1 cut(s) | 430 |
| Fnu4HI | GCNGC | 1 cut(s) | 426 |
| FokI | GGATG | 1 cut(s) | 90 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 1 cut(s) | 426 |
| FspBI | CTAG | 3 cut(s) | 179, 276, 384 |
| GluI | GCNGC | 1 cut(s) | 426 |
| HaeIII | GGCC | 3 cut(s) | 84, 252, 371 |
| Hin1II | CATG | 3 cut(s) | 232, 437, 543 |
| HinfI | GANTC | 2 cut(s) | 8, 484 |
| Hpy188I | TCNGA | 5 cut(s) | 7, 460, 471, 483, 520 |
| Hpy188III | TCNNGA | 1 cut(s) | 276 |
| HpyAV | CCTTC | 1 cut(s) | 113 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 499 |
| HpyCH4V | TGCA | 3 cut(s) | 324, 333, 524 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 96, 330, 422, 446, 530 |
| Hsp92II | CATG | 3 cut(s) | 232, 437, 543 |
| Ksp22I | TGATCA | 1 cut(s) | 430 |
| Kzo9I | GATC | 4 cut(s) | 287, 357, 402, 430 |
| LmnI | GCTCC | 2 cut(s) | 175, 538 |
| LpnPI | CCDG | 5 cut(s) | 35, 66, 93, 346, 379 |
| Lsp1109I | GCAGC | 1 cut(s) | 437 |
| LweI | GCATC | 2 cut(s) | 77, 511 |
| MaeI | CTAG | 3 cut(s) | 179, 276, 384 |
| MalI | GATC | 4 cut(s) | 289, 359, 404, 432 |
| MboI | GATC | 4 cut(s) | 287, 357, 402, 430 |
| MboII | GAAGA | 1 cut(s) | 366 |
| MhlI | GDGCHC | 1 cut(s) | 126 |
| MlsI | TGGCCA | 1 cut(s) | 252 |
| MluCI | AATT | 3 cut(s) | 192, 212, 472 |
| MluNI | TGGCCA | 1 cut(s) | 252 |
| MlyI | GAGTC | 1 cut(s) | 17 |
| MmeI | TCCRAC | 2 cut(s) | 438, 518 |
| MnlI | CCTC | 6 cut(s) | 154, 193, 292, 382, 477, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 252 |
| MscI | TGGCCA | 1 cut(s) | 252 |
| MseI | TTAA | 2 cut(s) | 195, 350 |
| Msp20I | TGGCCA | 1 cut(s) | 252 |
| MspA1I | CMGCKG | 3 cut(s) | 36, 293, 428 |
| MspR9I | CCNGG | 1 cut(s) | 81 |
| MvaI | CCWGG | 1 cut(s) | 81 |
| MvnI | CGCG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 96, 330, 422, 446, 530 |
| NdeII | GATC | 4 cut(s) | 287, 357, 402, 430 |
| NlaIII | CATG | 3 cut(s) | 232, 437, 543 |
| PfeI | GAWTC | 1 cut(s) | 484 |
| PkrI | GCNGC | 1 cut(s) | 427 |
| PleI | GAGTC | 1 cut(s) | 16 |
| PpsI | GAGTC | 1 cut(s) | 16 |
| Psp6I | CCWGG | 1 cut(s) | 79 |
| PspGI | CCWGG | 1 cut(s) | 79 |
| PvuII | CAGCTG | 3 cut(s) | 36, 293, 428 |
| SaqAI | TTAA | 2 cut(s) | 195, 350 |
| SatI | GCNGC | 1 cut(s) | 426 |
| Sau3AI | GATC | 4 cut(s) | 287, 357, 402, 430 |
| SchI | GAGTC | 1 cut(s) | 17 |
| ScrFI | CCNGG | 1 cut(s) | 81 |
| SduI | GDGCHC | 1 cut(s) | 126 |
| SfaNI | GCATC | 2 cut(s) | 77, 511 |
| SfcI | CTRYAG | 1 cut(s) | 114 |
| Sse9I | AATT | 3 cut(s) | 192, 212, 472 |
| SsiI | CCGC | 1 cut(s) | 107 |
| SspI | AATATT | 1 cut(s) | 140 |
| SspMI | CTAG | 3 cut(s) | 179, 276, 384 |
| StyD4I | CCNGG | 1 cut(s) | 79 |
| TaaI | ACNGT | 2 cut(s) | 151, 499 |
| TasI | AATT | 3 cut(s) | 192, 212, 472 |
| TfiI | GAWTC | 1 cut(s) | 484 |
| Tru1I | TTAA | 2 cut(s) | 195, 350 |
| Tru9I | TTAA | 2 cut(s) | 195, 350 |
| TseI | GCWGC | 1 cut(s) | 425 |
| TspDTI | ATGAA | 3 cut(s) | 132, 245, 404 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 117 |
| XbaI | TCTAGA | 1 cut(s) | 275 |
| XspI | CTAG | 3 cut(s) | 179, 276, 384 |