Prupe.6G147400_v2.0.a1

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008445
Physical Location & Seq
Reverse (-)
12283291 .. 12286216
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G147400.1

Sequence Viewer

Length: 354 bp
ATGGCATATTCTGAAGGACGTGATTTCATGTTCTGCGACTTGTGTGGGACTATGCGAACATTGAGTTCAACTAAGCATGCTCAATGCCCCTTGTGCAAGCGTAAGATAAGCGCGAAAGAGATCTCCGGAAGACAAATATCTTACACAGCCACTGCTGAGGATATTAGAAGGGAGCTAGGCATATCAATAATTCGTGAAGAAAAAGTGCAATTGCAAAAGACAGATGCTAAAACATGTGAAAAATGTGGCCACAATGAGCATACATATTATTCCAGACAGATGCGATCAGCAGATGAAGGAGCAACTACTTTCTACGTGTGCACCAATTGCCAGCACCAGTTTACAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020
Pfam Domains
Protein Families
TFIIS_C

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

8.12

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 33
AflIII ACRYGT 2 cut(s) 233, 315
AgsI TTSAA 1 cut(s) 69
AjiI CACGTC 1 cut(s) 20
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 156
BfaI CTAG 1 cut(s) 176
BglII AGATCT 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 20
BmsI GCATC 2 cut(s) 214, 270
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 337
BseAI TCCGGA 1 cut(s) 125
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 2 cut(s) 120, 284
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 337
BssMI GATC 2 cut(s) 120, 284
BstAPI GCANNNNNTGC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 78, 98, 332
BstDEI CTNAG 2 cut(s) 72, 156
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 123, 287
BstMBI GATC 2 cut(s) 120, 284
BstMWI GCNNNNNNNGC 2 cut(s) 93, 327
BstNSI RCATGY 2 cut(s) 80, 237
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 249
BtrI CACGTC 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 78, 98, 332
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 113
CviAII CATG 3 cut(s) 28, 77, 234
CviJI RGCY 3 cut(s) 149, 175, 249
CviKI_1 RGCY 3 cut(s) 149, 175, 249
DdeI CTNAG 2 cut(s) 72, 156
DpnI GATC 2 cut(s) 122, 286
DpnII GATC 2 cut(s) 120, 284
EaeI YGGCCR 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 33
FaeI CATG 3 cut(s) 31, 80, 237
FaiI YATR 8 cut(s) 7, 29, 53, 78, 182, 235, 261, 265
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 27, 76, 233
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 113
Hin1II CATG 3 cut(s) 31, 80, 237
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 321, 342
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 126, 194, 273
Hpy8I GTNNAC 2 cut(s) 321, 342
HpyAV CCTTC 3 cut(s) 8, 162, 290
HpyCH4IV ACGT 2 cut(s) 19, 315
HpyCH4V TGCA 4 cut(s) 96, 208, 214, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 327
HpyF3I CTNAG 2 cut(s) 72, 156
HpySE526I ACGT 2 cut(s) 19, 315
Hsp92II CATG 3 cut(s) 31, 80, 237
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 2 cut(s) 120, 284
LmnI GCTCC 2 cut(s) 172, 299
LpnPI CCDG 4 cut(s) 139, 286, 344, 350
LweI GCATC 2 cut(s) 214, 270
MaeI CTAG 1 cut(s) 176
MaeII ACGT 2 cut(s) 19, 315
MalI GATC 2 cut(s) 122, 286
MboI GATC 2 cut(s) 120, 284
MboII GAAGA 2 cut(s) 141, 209
MfeI CAATTG 2 cut(s) 209, 325
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 4 cut(s) 189, 209, 325, 349
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 1 cut(s) 151
Mox20I TGGCCA 1 cut(s) 249
MroI TCCGGA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 126
MunI CAATTG 2 cut(s) 209, 325
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 93, 327
NdeII GATC 2 cut(s) 120, 284
NlaIII CATG 3 cut(s) 31, 80, 237
NspI RCATGY 2 cut(s) 80, 237
PaeI GCATGC 1 cut(s) 80
PciI ACATGT 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 316
PscI ACATGT 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 120
Sau3AI GATC 2 cut(s) 120, 284
SduI GDGCHC 1 cut(s) 323
SetI ASST 3 cut(s) 22, 177, 318
SfaNI GCATC 2 cut(s) 214, 270
SphI GCATGC 1 cut(s) 80
Sse9I AATT 4 cut(s) 189, 209, 325, 349
SspMI CTAG 1 cut(s) 176
TaiI ACGT 2 cut(s) 22, 318
TasI AATT 4 cut(s) 189, 209, 325, 349
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 16, 309
TspRI CASTG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 319
XceI RCATGY 2 cut(s) 80, 237
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.