DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT1G20065 AT3G25940 |
| fragaria_vesca | FvH4_1g24780 |
| malus_domestica | MD08G1010500.v1.1 MD15G1010600.v1.1 |
| prunus_persica | Prupe.6G147400_v2.0.a1 |
| pyrus_communis | pycom08g00890 pycom15g00880 |
| rosa_chinensis | RchiOBHm_Chr2g0124111 |
| rosa_laevigata | RLG00000018781 |
| rosa_multiflora | Rmu_sc0002933.1_g000004 Rmu_sc0008812.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00120120 |
| rosa_rugosa | Rorug02G0248600 |
| rosa_samantha | Rh2AG307500 Rh2BG316600 Rh2CG294300 Rh2DG331300 |
| rosa_wichuraiana | Rw2G024790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 118 |
| AciI | CCGC | 1 cut(s) | 116 |
| AclWI | GGATC | 1 cut(s) | 419 |
| AcoI | YGGCCR | 2 cut(s) | 91, 259 |
| AdeI | CACNNNGTG | 1 cut(s) | 339 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AgsI | TTSAA | 2 cut(s) | 179, 462 |
| AjnI | CCWGG | 1 cut(s) | 88 |
| AluBI | AGCT | 5 cut(s) | 45, 187, 302, 437, 542 |
| AluI | AGCT | 5 cut(s) | 45, 187, 302, 437, 542 |
| Alw26I | GTCTC | 1 cut(s) | 24 |
| AlwI | GGATC | 1 cut(s) | 419 |
| AoxI | GGCC | 3 cut(s) | 91, 259, 378 |
| BalI | TGGCCA | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 135 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 367, 399 |
| BauI | CACGAG | 1 cut(s) | 21 |
| BccI | CCATC | 1 cut(s) | 120 |
| BciT130I | CCWGG | 1 cut(s) | 90 |
| BclI | TGATCA | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 24 |
| BfaI | CTAG | 3 cut(s) | 188, 285, 393 |
| BfmI | CTRYAG | 1 cut(s) | 123 |
| Bme1390I | CCNGG | 1 cut(s) | 90 |
| BmrFI | CCNGG | 1 cut(s) | 90 |
| BmsI | GCATC | 1 cut(s) | 520 |
| BsaAI | YACGTR | 1 cut(s) | 276 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 58, 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse1I | ACTGG | 1 cut(s) | 407 |
| BseBI | CCWGG | 1 cut(s) | 90 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseNI | ACTGG | 1 cut(s) | 407 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| BshFI | GGCC | 3 cut(s) | 93, 261, 380 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 24 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsnI | GGCC | 3 cut(s) | 93, 261, 380 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 4 cut(s) | 296, 366, 411, 439 |
| BspACI | CCGC | 1 cut(s) | 116 |
| BspANI | GGCC | 3 cut(s) | 93, 261, 380 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspPI | GGATC | 1 cut(s) | 419 |
| BsrI | ACTGG | 1 cut(s) | 407 |
| BssMI | GATC | 4 cut(s) | 296, 366, 411, 439 |
| BssSI | CACGAG | 1 cut(s) | 21 |
| Bst2BI | CACGAG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 1 cut(s) | 90 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 1 cut(s) | 388 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 339 |
| BstBAI | YACGTR | 1 cut(s) | 276 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 126 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstKTI | GATC | 4 cut(s) | 299, 369, 414, 442 |
| BstMAI | GTCTC | 1 cut(s) | 24 |
| BstMBI | GATC | 4 cut(s) | 296, 366, 411, 439 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 339, 455, 539 |
| BstNI | CCWGG | 1 cut(s) | 90 |
| BstSCI | CCNGG | 1 cut(s) | 88 |
| BstSFI | CTRYAG | 1 cut(s) | 123 |
| BstSNI | TACGTA | 1 cut(s) | 276 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BsuRI | GGCC | 3 cut(s) | 93, 261, 380 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 28, 63 |
| CviAII | CATG | 3 cut(s) | 10, 238, 549 |
| CviJI | RGCY | 9 cut(s) | 45, 93, 133, 187, 261, 302, 380, 437, 542 |
| CviKI_1 | RGCY | 9 cut(s) | 45, 93, 133, 187, 261, 302, 380, 437, 542 |
| DpnI | GATC | 4 cut(s) | 298, 368, 413, 441 |
| DpnII | GATC | 4 cut(s) | 296, 366, 411, 439 |
| DraIII | CACNNNGTG | 1 cut(s) | 339 |
| EaeI | YGGCCR | 2 cut(s) | 91, 259 |
| Eam1104I | CTCTTC | 1 cut(s) | 388 |
| EarI | CTCTTC | 1 cut(s) | 388 |
| Eco105I | TACGTA | 1 cut(s) | 276 |
| Eco24I | GRGCYC | 1 cut(s) | 135 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 126 |
| EcoRII | CCWGG | 1 cut(s) | 88 |
| EcoT38I | GRGCYC | 1 cut(s) | 135 |
| FaeI | CATG | 3 cut(s) | 13, 241, 552 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FatI | CATG | 3 cut(s) | 9, 237, 548 |
| FbaI | TGATCA | 1 cut(s) | 439 |
| FokI | GGATG | 1 cut(s) | 99 |
| FriOI | GRGCYC | 1 cut(s) | 135 |
| FspBI | CTAG | 3 cut(s) | 188, 285, 393 |
| HaeIII | GGCC | 3 cut(s) | 93, 261, 380 |
| Hin1II | CATG | 3 cut(s) | 13, 241, 552 |
| HinfI | GANTC | 3 cut(s) | 17, 487, 493 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 469, 480, 492, 529 |
| Hpy188III | TCNNGA | 1 cut(s) | 285 |
| HpyAV | CCTTC | 2 cut(s) | 122, 518 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 2 cut(s) | 275, 444 |
| HpyCH4V | TGCA | 3 cut(s) | 39, 333, 342 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 339, 455, 539 |
| HpySE526I | ACGT | 2 cut(s) | 275, 444 |
| Hsp92II | CATG | 3 cut(s) | 13, 241, 552 |
| Ksp22I | TGATCA | 1 cut(s) | 439 |
| Kzo9I | GATC | 4 cut(s) | 296, 366, 411, 439 |
| LmnI | GCTCC | 2 cut(s) | 184, 547 |
| LpnPI | CCDG | 5 cut(s) | 44, 75, 102, 355, 388 |
| LweI | GCATC | 1 cut(s) | 520 |
| MaeI | CTAG | 3 cut(s) | 188, 285, 393 |
| MaeII | ACGT | 2 cut(s) | 275, 444 |
| MalI | GATC | 4 cut(s) | 298, 368, 413, 441 |
| MboI | GATC | 4 cut(s) | 296, 366, 411, 439 |
| MboII | GAAGA | 1 cut(s) | 375 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MlsI | TGGCCA | 1 cut(s) | 261 |
| MluCI | AATT | 3 cut(s) | 201, 221, 481 |
| MluNI | TGGCCA | 1 cut(s) | 261 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 2 cut(s) | 447, 527 |
| MnlI | CCTC | 6 cut(s) | 163, 202, 301, 391, 486, 510 |
| Mox20I | TGGCCA | 1 cut(s) | 261 |
| MscI | TGGCCA | 1 cut(s) | 261 |
| MseI | TTAA | 2 cut(s) | 204, 359 |
| Msp20I | TGGCCA | 1 cut(s) | 261 |
| MspA1I | CMGCKG | 2 cut(s) | 45, 302 |
| MspR9I | CCNGG | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 90 |
| MvnI | CGCG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 339, 455, 539 |
| NdeII | GATC | 4 cut(s) | 296, 366, 411, 439 |
| NlaIII | CATG | 3 cut(s) | 13, 241, 552 |
| PfeI | GAWTC | 2 cut(s) | 487, 493 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| Ppu21I | YACGTR | 1 cut(s) | 276 |
| Psp6I | CCWGG | 1 cut(s) | 88 |
| PspGI | CCWGG | 1 cut(s) | 88 |
| PvuII | CAGCTG | 2 cut(s) | 45, 302 |
| SaqAI | TTAA | 2 cut(s) | 204, 359 |
| Sau3AI | GATC | 4 cut(s) | 296, 366, 411, 439 |
| SchI | GAGTC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 1 cut(s) | 90 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SfaNI | GCATC | 1 cut(s) | 520 |
| SfcI | CTRYAG | 1 cut(s) | 123 |
| SnaBI | TACGTA | 1 cut(s) | 276 |
| Sse9I | AATT | 3 cut(s) | 201, 221, 481 |
| SsiI | CCGC | 1 cut(s) | 116 |
| SspI | AATATT | 1 cut(s) | 149 |
| SspMI | CTAG | 3 cut(s) | 188, 285, 393 |
| StyD4I | CCNGG | 1 cut(s) | 88 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaiI | ACGT | 2 cut(s) | 278, 447 |
| TasI | AATT | 3 cut(s) | 201, 221, 481 |
| TfiI | GAWTC | 2 cut(s) | 487, 493 |
| Tru1I | TTAA | 2 cut(s) | 204, 359 |
| Tru9I | TTAA | 2 cut(s) | 204, 359 |
| TspDTI | ATGAA | 2 cut(s) | 141, 254 |
| TspGWI | ACGGA | 1 cut(s) | 248 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 126 |
| XbaI | TCTAGA | 1 cut(s) | 284 |
| XspI | CTAG | 3 cut(s) | 188, 285, 393 |