Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Forward (+)

19288337 .. 19298676

Gene Structure 10340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGCATGCAGATGTGGAGACGGATGAAGTATATGCCCAGATGACATTGCAGCCTTTGACTCCGCAAGAACAAAAGGAGACATTTCTTCCCATGGAGTTGGGAGTTCCAAGCAAGCAACCAACAAATTACTTTTGCAAGACACTCACCGCGAGTGACACTAGTACACATGGAGGCTTCTCTGTTCCTCGTCGCGCCGCTGAGAAAGTTTTTCCTCCACTGGATTTCTCGCTACAGCCACCAGCCCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTCCGAGGACAGCCAAAACGGCATCTTCTCACGACAGGTTGGAGTGTATTTGTTAGTGCCAAAAGGCTTGTTGCTGGAGATTCTGTTCTTTTTATTTGGAATGAAAAGAATCAGCTCCTTTTGGGGATTCGCCGTGCAACTCGACCACAAACTGTGATGCCGTCATCTGTTTTGTCAAGTGATAGCATGCACATCGGACTTCTTGCTGCTGCTGCCCATGCATCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGACGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCACTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACTGCAGGTGAGAGGCAGCCAAGGGTTTCATTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTATTTCCCCTCCGACTGAAGCGTCCTTGGCATCCTGGGGCTTCATCAATGCATGATAACAGAGATGAAGCAGCTAACTTAATGTGGCTGAGGGGGGCAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCCTGGATGCAGCAGAGATTGGATTCAACATTGATGGGAAATGACCCCAATCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATGTAGGAAGCGGAGATCAGCTAAGACAACATGTAATGCACTTCCAGCAGCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGCGCAGCCACAAGTTTCAATGGAGAATCTGCCACAGCACCTTCTACCACCGCAATTTAACAATCAAACAGAGGAAGAGCCGCATCAACAACAGAACACCTATCATGATGCACTTAAGGTTCAAAGTGAACAACTTCATCGGAGTCAGCAAATGAATGTGCCATCTCCATCATTTTCTAGAGCAGACTACACGGATTCAAGCACAAAGTTGTCGGGATCTACTAACTCTAGACAGAACACGCTTGGTTCATTGTGTCCTGAAGGGAGTAATAGTGTTTTAAACAGAGCTGGTCCAGCTGAGCAGTTACCTCAACAATCTTGGACTCCAAAGTTTGCATATGCGCAGGCCAATGCCTTTGCCAACCCAATGTCATTCGCACCTTTTAATGAGAAAGACAACGCAGTTGAGCAAGAGAATTGTAATTCAGATTCCCAAAATCCTACTCTCTTTGGTGTTAATATAGAGTCATCTGGGCTTGTATTCCCCACCACAGTGCCCAACTTTGCCACTTCTTCAAATGATGCTGACATGCCAATGCCTTTAGGGGATTCTGGGTTTCAGAGTTCTCTGTATGGTTGCATACAAGATTCGACTGAGTTGTTGCATGGTGCAGGTCAAGTTGACCCACCTACCCCAAACTGTACATTTGTCAAGGTGTATAAGTCAGGGTCGGTTGGCCGCTCACTGGACATCTCCCGGTTCAGCAGCTATAATCAGCTGCGAGAAGAACTGGCCCAGATGTTTGGCATTGAGGGGAAGTTGGAAGATTGTCTTAGATCAGGCTGGCAGCTTGTATTCGTTGACAGGGAGGACGATGTGCTTCTTCTTGGAGACGACCCATGGGAGTCATTTGTGAACAATGTTTGGTATATCAAGATACTTTCTCCTGAGGATGTGCACAAAATGGGCGACCAAGCAGTTGATTCCTTTACCCCAAATGCGGGTCAAAGAGTGAATAGCAGTGCAAATGAAACTCAAGACCATATTTCTGGGCTACCATCTCTCGGCTCACTTGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

753

Amino Acids

84.19

Weight (kDa)

5.55

Isoelectric Point (pI)

64.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	44 - 145	5.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	168 - 276	7.5e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	193 - 276	6.4e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AarI	CACCTGC	1 cut(s)	773
AasI	GACNNNNNNGTC	2 cut(s)	667, 873
Acc16I	TGCGCA	1 cut(s)	1578
Acc36I	ACCTGC	2 cut(s)	773, 1838
AccBSI	CCGCTC	1 cut(s)	1917
AccII	CGCG	2 cut(s)	149, 192
AciI	CCGC	9 cut(s)	62, 147, 195, 1101, 1208, 1286, 1316, 1915, 2177
AclWI	GGATC	4 cut(s)	270, 713, 726, 1459
AcoI	YGGCCR	2 cut(s)	731, 1912
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	5 cut(s)	684, 890, 1130, 1139, 1515
AcvI	CACGTG	1 cut(s)	623
AfaI	GTAC	7 cut(s)	163, 686, 694, 845, 1061, 1151, 1879
AfiI	CCNNNNNNNGG	4 cut(s)	1921, 2176, 2177, 2240
AflII	CTTAAG	1 cut(s)	1349
AflIII	ACRYGT	3 cut(s)	620, 622, 1120
AgsI	TTSAA	7 cut(s)	525, 971, 1029, 1254, 1358, 1434, 1752
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	4 cut(s)	243, 886, 1004, 1062
AleI	CACNNNNGTG	2 cut(s)	621, 1727
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
Alw21I	GWGCWC	1 cut(s)	2136
Alw26I	GTCTC	4 cut(s)	11, 71, 653, 2061
Alw44I	GTGCAC	1 cut(s)	2132
AlwI	GGATC	4 cut(s)	270, 713, 726, 1459
AoxI	GGCC	5 cut(s)	731, 1065, 1581, 1912, 1968
ApaLI	GTGCAC	1 cut(s)	2132
ApoI	RAATTY	1 cut(s)	736
Asp700I	GAANNNNTTC	1 cut(s)	1368
AspLEI	GCGC	3 cut(s)	194, 1240, 1579
AspS9I	GGNCC	2 cut(s)	1526, 1969
AsuC2I	CCSGG	2 cut(s)	1164, 1933
AsuHPI	GGTGA	2 cut(s)	136, 797
AvaII	GGWCC	1 cut(s)	1526
AxyI	CCTNAGG	1 cut(s)	2124
BaeGI	GKGCMC	2 cut(s)	1734, 2136
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BalI	TGGCCA	1 cut(s)	733
BamHI	GGATCC	1 cut(s)	718
BbrPI	CACGTG	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	959
Bbv12I	GWGCWC	1 cut(s)	2136
BbvCI	CCTCAGC	1 cut(s)	941
BccI	CCATC	6 cut(s)	577, 856, 1030, 1405, 1411, 2242
BceAI	ACGGC	3 cut(s)	332, 414, 442
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	4 cut(s)	245, 888, 1006, 1064
BcnI	CCSGG	2 cut(s)	1164, 1933
BcoDI	GTCTC	4 cut(s)	11, 71, 653, 2061
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	5 cut(s)	159, 258, 564, 1413, 1464
BfmI	CTRYAG	3 cut(s)	230, 780, 1232
BfrI	CTTAAG	1 cut(s)	1349
BfuAI	ACCTGC	2 cut(s)	773, 1838
BglI	GCCNNNNNGGC	2 cut(s)	316, 1073
BlpI	GCTNAGC	1 cut(s)	1533
Bme1390I	CCNGG	6 cut(s)	245, 888, 1006, 1064, 1164, 1933
Bme18I	GGWCC	1 cut(s)	1526
BmgT120I	GGNCC	2 cut(s)	1526, 1969
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	6 cut(s)	245, 888, 1006, 1064, 1164, 1933
BpiI	GAAGAC	1 cut(s)	959
BpmI	CTGGAG	2 cut(s)	393, 975
Bpu10I	CCTNAGC	1 cut(s)	941
Bpu1102I	GCTNAGC	1 cut(s)	1533
BpuEI	CTTGAG	1 cut(s)	2196
BpuMI	CCSGG	2 cut(s)	1164, 1933
BsaAI	YACGTR	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	717
BsaJI	CCNNGG	9 cut(s)	90, 243, 301, 557, 797, 878, 887, 1004, 2075
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 1492, 1522
Bsc4I	CCNNNNNNNGG	4 cut(s)	1921, 2176, 2177, 2240
Bse1I	ACTGG	6 cut(s)	222, 706, 749, 958, 1926, 1971
Bse21I	CCTNAGG	1 cut(s)	2124
Bse3DI	GCAATG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	4 cut(s)	245, 888, 1006, 1064
BseDI	CCNNGG	9 cut(s)	90, 243, 301, 557, 797, 878, 887, 1004, 2075
BseGI	GGATG	7 cut(s)	28, 642, 654, 775, 883, 1014, 2134
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	4 cut(s)	1921, 2176, 2177, 2240
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	6 cut(s)	189, 564, 932, 1524, 1821, 2115
BseNI	ACTGG	6 cut(s)	222, 706, 749, 958, 1926, 1971
BseSI	GKGCMC	2 cut(s)	1734, 2136
BsgI	GTGCAG	1 cut(s)	1866
Bsh1236I	CGCG	2 cut(s)	149, 192
BshFI	GGCC	5 cut(s)	733, 1067, 1583, 1914, 1970
BsiHKAI	GWGCWC	1 cut(s)	2136
BsiSI	CCGG	2 cut(s)	1163, 1933
BslFI	GGGAC	1 cut(s)	1202
BslI	CCNNNNNNNGG	4 cut(s)	1921, 2176, 2177, 2240
BsmAI	GTCTC	4 cut(s)	11, 71, 653, 2061
BsmBI	CGTCTC	2 cut(s)	11, 2061
BsmFI	GGGAC	1 cut(s)	1202
BsnI	GGCC	5 cut(s)	733, 1067, 1583, 1914, 1970
Bsp1286I	GDGCHC	2 cut(s)	1734, 2136
Bsp1407I	TGTACA	1 cut(s)	1877
Bsp143I	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
Bsp1720I	GCTNAGC	1 cut(s)	1533
Bsp19I	CCATGG	2 cut(s)	90, 2075
BspACI	CCGC	9 cut(s)	62, 147, 195, 1101, 1208, 1286, 1316, 1915, 2177
BspANI	GGCC	5 cut(s)	733, 1067, 1583, 1914, 1970
BspCNI	CTCAG	6 cut(s)	190, 565, 933, 1525, 1822, 2116
BspFNI	CGCG	2 cut(s)	149, 192
BspHI	TCATGA	1 cut(s)	1339
BspLI	GGNNCC	1 cut(s)	720
BspMAI	CTGCAG	2 cut(s)	784, 1236
BspMI	ACCTGC	2 cut(s)	773, 1838
BspPI	GGATC	4 cut(s)	270, 713, 726, 1459
BspQI	GCTCTTC	1 cut(s)	1305
BspTI	CTTAAG	1 cut(s)	1349
BsrBI	CCGCTC	1 cut(s)	1917
BsrDI	GCAATG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	1877
BsrI	ACTGG	6 cut(s)	222, 706, 749, 958, 1926, 1971
BssECI	CCNNGG	9 cut(s)	90, 243, 301, 557, 797, 878, 887, 1004, 2075
BssMI	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
BssT1I	CCWWGG	5 cut(s)	90, 557, 797, 878, 2075
Bst2UI	CCWGG	4 cut(s)	245, 888, 1006, 1064
Bst4CI	ACNGT	5 cut(s)	451, 544, 684, 1729, 1877
Bst6I	CTCTTC	3 cut(s)	660, 1149, 1305
BstAFI	CTTAAG	1 cut(s)	1349
BstAUI	TGTACA	1 cut(s)	1877
BstBAI	YACGTR	1 cut(s)	623
BstC8I	GCNNGC	6 cut(s)	6, 113, 485, 1236, 1581, 2021
BstDEI	CTNAG	8 cut(s)	198, 573, 941, 1112, 1533, 1830, 2009, 2124
BstDSI	CCRYGG	2 cut(s)	90, 2075
BstF5I	GGATG	7 cut(s)	28, 642, 654, 775, 883, 1014, 2134
BstFNI	CGCG	2 cut(s)	149, 192
BstHHI	GCGC	3 cut(s)	194, 1240, 1579
BstKTI	GATC	7 cut(s)	265, 715, 721, 752, 1108, 1454, 2015
BstMAI	GTCTC	4 cut(s)	11, 71, 653, 2061
BstMBI	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
BstNI	CCWGG	4 cut(s)	245, 888, 1006, 1064
BstNSI	RCATGY	4 cut(s)	8, 487, 1124, 1768
BstSCI	CCNGG	6 cut(s)	243, 886, 1004, 1062, 1162, 1931
BstSFI	CTRYAG	3 cut(s)	230, 780, 1232
BstSLI	GKGCMC	2 cut(s)	1734, 2136
BstUI	CGCG	2 cut(s)	149, 192
BstV2I	GAAGAC	1 cut(s)	959
BstX2I	RGATCY	3 cut(s)	262, 718, 1451
BstXI	CCANNNNNNTGG	4 cut(s)	97, 992, 1979, 2225
BstYI	RGATCY	3 cut(s)	262, 718, 1451
Bsu36I	CCTNAGG	1 cut(s)	2124
BsuRI	GGCC	5 cut(s)	733, 1067, 1583, 1914, 1970
BtgI	CCRYGG	2 cut(s)	90, 2075
BtsCI	GGATG	7 cut(s)	28, 642, 654, 775, 883, 1014, 2134
BtsI	GCAGTG	1 cut(s)	2203
BtsIMutI	CAGTG	5 cut(s)	215, 742, 1734, 1919, 2203
BveI	ACCTGC	2 cut(s)	773, 1838
Cac8I	GCNNGC	6 cut(s)	6, 113, 485, 1236, 1581, 2021
CciI	TCATGA	1 cut(s)	1339
CfoI	GCGC	3 cut(s)	194, 1240, 1579
Cfr13I	GGNCC	2 cut(s)	1526, 1969
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	7 cut(s)	162, 685, 693, 844, 1060, 1150, 1878
CviQI	GTAC	7 cut(s)	162, 685, 693, 844, 1060, 1150, 1878
DdeI	CTNAG	8 cut(s)	198, 573, 941, 1112, 1533, 1830, 2009, 2124
DpnI	GATC	7 cut(s)	264, 714, 720, 751, 1107, 1453, 2014
DpnII	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
DraI	TTTAAA	1 cut(s)	1515
DrdI	GACNNNNNNGTC	2 cut(s)	667, 873
DseDI	GACNNNNNNGTC	2 cut(s)	667, 873
EaeI	YGGCCR	2 cut(s)	731, 1912
Eam1104I	CTCTTC	3 cut(s)	660, 1149, 1305
EarI	CTCTTC	3 cut(s)	660, 1149, 1305
Eco130I	CCWWGG	5 cut(s)	90, 557, 797, 878, 2075
Eco47I	GGWCC	1 cut(s)	1526
Eco57I	CTGAAG	5 cut(s)	684, 890, 1130, 1139, 1515
Eco72I	CACGTG	1 cut(s)	623
Eco81I	CCTNAGG	1 cut(s)	2124
EcoRII	CCWGG	4 cut(s)	243, 886, 1004, 1062
EcoT14I	CCWWGG	5 cut(s)	90, 557, 797, 878, 2075
EcoT22I	ATGCAT	3 cut(s)	6, 520, 906
ErhI	CCWWGG	5 cut(s)	90, 557, 797, 878, 2075
Esp3I	CGTCTC	2 cut(s)	11, 2061
FalI	AAGNNNNNCTT	2 cut(s)	1992, 2024
FaqI	GGGAC	1 cut(s)	1202
FauI	CCCGC	1 cut(s)	2170
FauNDI	CATATG	1 cut(s)	1573
FokI	GGATG	7 cut(s)	35, 649, 661, 782, 870, 1021, 2141
FspBI	CTAG	5 cut(s)	159, 258, 564, 1413, 1464
FspI	TGCGCA	1 cut(s)	1578
GlaI	GCGC	3 cut(s)	193, 1239, 1578
GsuI	CTGGAG	2 cut(s)	393, 975
HaeIII	GGCC	5 cut(s)	733, 1067, 1583, 1914, 1970
HapII	CCGG	2 cut(s)	1163, 1933
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	3 cut(s)	194, 1240, 1579
Hin6I	GCGC	3 cut(s)	192, 1238, 1577
HinP1I	GCGC	3 cut(s)	192, 1238, 1577
HincII	GTYRAC	3 cut(s)	777, 1858, 2038
HindII	GTYRAC	3 cut(s)	777, 1858, 2038
HpaII	CCGG	2 cut(s)	1163, 1933
HphI	GGTGA	2 cut(s)	136, 797
Hpy166II	GTNNAC	8 cut(s)	164, 777, 1085, 1364, 1858, 2038, 2092, 2134
Hpy188I	TCNGA	9 cut(s)	302, 494, 574, 648, 680, 866, 1377, 1663, 1797
Hpy8I	GTNNAC	8 cut(s)	164, 777, 1085, 1364, 1858, 2038, 2092, 2134
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	1163, 1286, 1490
HpyCH4III	ACNGT	5 cut(s)	451, 544, 684, 1729, 1877
HpyCH4IV	ACGT	1 cut(s)	622
HpyF3I	CTNAG	8 cut(s)	198, 573, 941, 1112, 1533, 1830, 2009, 2124
HpySE526I	ACGT	1 cut(s)	622
HspAI	GCGC	3 cut(s)	192, 1238, 1577
Kzo9I	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
LguI	GCTCTTC	1 cut(s)	1305
LmnI	GCTCC	1 cut(s)	417
MaeI	CTAG	5 cut(s)	159, 258, 564, 1413, 1464
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	152, 1539
MalI	GATC	7 cut(s)	264, 714, 720, 751, 1107, 1453, 2014
MbiI	CCGCTC	1 cut(s)	1917
MboI	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
MflI	RGATCY	3 cut(s)	262, 718, 1451
MhlI	GDGCHC	2 cut(s)	1734, 2136
MlsI	TGGCCA	1 cut(s)	733
MluCI	AATT	6 cut(s)	124, 736, 1203, 1289, 1651, 1657
MluNI	TGGCCA	1 cut(s)	733
MlyI	GAGTC	7 cut(s)	52, 677, 782, 1387, 1552, 1709, 2090
MmeI	TCCRAC	3 cut(s)	317, 889, 1977
Mox20I	TGGCCA	1 cut(s)	733
Mph1103I	ATGCAT	3 cut(s)	6, 520, 906
MroXI	GAANNNNTTC	1 cut(s)	1368
MscI	TGGCCA	1 cut(s)	733
MseI	TTAA	7 cut(s)	603, 932, 1293, 1350, 1514, 1620, 1692
MslI	CAYNNNNRTG	4 cut(s)	9, 621, 1727, 1769
Msp20I	TGGCCA	1 cut(s)	733
MspA1I	CMGCKG	4 cut(s)	197, 1189, 1532, 1954
MspCI	CTTAAG	1 cut(s)	1349
MspI	CCGG	2 cut(s)	1163, 1933
MspR9I	CCNGG	6 cut(s)	245, 888, 1006, 1064, 1164, 1933
MvaI	CCWGG	4 cut(s)	245, 888, 1006, 1064
MvnI	CGCG	2 cut(s)	149, 192
NciI	CCSGG	2 cut(s)	1164, 1933
NcoI	CCATGG	2 cut(s)	90, 2075
NdeI	CATATG	1 cut(s)	1573
NdeII	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
NlaIV	GGNNCC	1 cut(s)	720
NmeAIII	GCCGAG	1 cut(s)	2220
NmuCI	GTSAC	1 cut(s)	152
NsbI	TGCGCA	1 cut(s)	1578
NsiI	ATGCAT	3 cut(s)	6, 520, 906
NspI	RCATGY	4 cut(s)	8, 487, 1124, 1768
OliI	CACNNNNGTG	2 cut(s)	621, 1727
PaeI	GCATGC	2 cut(s)	8, 487
PagI	TCATGA	1 cut(s)	1339
PaqCI	CACCTGC	1 cut(s)	773
PciI	ACATGT	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	1305
PdmI	GAANNNNTTC	1 cut(s)	1368
PleI	GAGTC	7 cut(s)	52, 676, 781, 1386, 1552, 1708, 2089
PmaCI	CACGTG	1 cut(s)	623
PmlI	CACGTG	1 cut(s)	623
PpsI	GAGTC	7 cut(s)	52, 676, 781, 1386, 1552, 1708, 2089
Ppu21I	YACGTR	1 cut(s)	623
PscI	ACATGT	1 cut(s)	1120
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	4 cut(s)	243, 886, 1004, 1062
PspCI	CACGTG	1 cut(s)	623
PspGI	CCWGG	4 cut(s)	243, 886, 1004, 1062
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	2 cut(s)	1526, 1969
PstI	CTGCAG	2 cut(s)	784, 1236
PsuI	RGATCY	3 cut(s)	262, 718, 1451
PvuII	CAGCTG	3 cut(s)	1189, 1532, 1954
RsaI	GTAC	7 cut(s)	163, 686, 694, 845, 1061, 1151, 1879
RsaNI	GTAC	7 cut(s)	162, 685, 693, 844, 1060, 1150, 1878
RseI	CAYNNNNRTG	4 cut(s)	9, 621, 1727, 1769
SapI	GCTCTTC	1 cut(s)	1305
SaqAI	TTAA	7 cut(s)	603, 932, 1293, 1350, 1514, 1620, 1692
Sau3AI	GATC	7 cut(s)	262, 712, 718, 749, 1105, 1451, 2012
Sau96I	GGNCC	2 cut(s)	1526, 1969
SchI	GAGTC	7 cut(s)	52, 677, 782, 1387, 1552, 1709, 2090
ScrFI	CCNGG	6 cut(s)	245, 888, 1006, 1064, 1164, 1933
SduI	GDGCHC	2 cut(s)	1734, 2136
SfcI	CTRYAG	3 cut(s)	230, 780, 1232
SinI	GGWCC	1 cut(s)	1526
SmiMI	CAYNNNNRTG	4 cut(s)	9, 621, 1727, 1769
SmlI	CTYRAG	3 cut(s)	1349, 2211, 2249
SmoI	CTYRAG	3 cut(s)	1349, 2211, 2249
SpeI	ACTAGT	1 cut(s)	158
SphI	GCATGC	2 cut(s)	8, 487
Sse9I	AATT	6 cut(s)	124, 736, 1203, 1289, 1651, 1657
SsiI	CCGC	9 cut(s)	62, 147, 195, 1101, 1208, 1286, 1316, 1915, 2177
SspMI	CTAG	5 cut(s)	159, 258, 564, 1413, 1464
StyD4I	CCNGG	6 cut(s)	243, 886, 1004, 1062, 1162, 1931
StyI	CCWWGG	5 cut(s)	90, 557, 797, 878, 2075
TaaI	ACNGT	5 cut(s)	451, 544, 684, 1729, 1877
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	439, 1826
TasI	AATT	6 cut(s)	124, 736, 1203, 1289, 1651, 1657
TatI	WGTACW	2 cut(s)	161, 1877
TauI	GCSGC	3 cut(s)	197, 1318, 1917
Tru1I	TTAA	7 cut(s)	603, 932, 1293, 1350, 1514, 1620, 1692
Tru9I	TTAA	7 cut(s)	603, 932, 1293, 1350, 1514, 1620, 1692
TscAI	CASTG	5 cut(s)	222, 749, 1734, 1926, 2203
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspGWI	ACGGA	2 cut(s)	35, 1442
TspRI	CASTG	5 cut(s)	222, 749, 1734, 1926, 2203
Vha464I	CTTAAG	1 cut(s)	1349
VneI	GTGCAC	1 cut(s)	2132
VpaK11BI	GGWCC	1 cut(s)	1526
XapI	RAATTY	1 cut(s)	736
XbaI	TCTAGA	2 cut(s)	1412, 1463
XceI	RCATGY	4 cut(s)	8, 487, 1124, 1768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	1368
XspI	CTAG	5 cut(s)	159, 258, 564, 1413, 1464
Zsp2I	ATGCAT	3 cut(s)	6, 520, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.