Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040567.1

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Forward (+)

11959 .. 13260

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040567.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggttctgcggagggaagggtttcctccatttggggcttcaatttggatttggaacaatctcaatttcgtcgagtatgatgatggtggaatagtaagtaagaaattaatagagaggaaggcgaagcttattgatattgatatgaagctttccacatcagggttcggtcggcaggaccaagaaggaggaggaggaggagcggagaagaagtgcttgaattcggcgctatggcatgcatgcgcagggcctctggtgtcgctgccgacgtctgggagtcgagtggtttactttcctcagggccacagtgaccaggttgctgctactactaacaaacaagttgatgctcacataccaaactacccggccttgcctccccagttgatctgtcagctccacaatgtcacaatgcatgcagatgtggagacggatgaagtatatgcccagatgacgttgcagcctttgactccgcaagaacaaaaggaaacatttcttcccatggagttgggaattccaagcaagcaaccgacaaattacttttgcaagacactcacggcgagtgacactagtacacacggaggcttctctgtccctcgtcgcgccgctgagaaagtgtttcctccactggatttctcgctacagccaccagcccaggaacttattgctagggatctccatgatgttgagtggaagtttaggcacatttttcgaggtaagatttgcaatgttggtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

244

Amino Acids

27.11

Weight (kDa)

6.44

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	269
Acc16I	TGCGCA	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	597
AciI	CCGC	4 cut(s)	10, 200, 467, 600
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	217, 507
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	3 cut(s)	32, 159, 269
AgsI	TTSAA	2 cut(s)	42, 217
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	309, 648
AluBI	AGCT	3 cut(s)	127, 148, 391
AluI	AGCT	3 cut(s)	127, 148, 391
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	3 cut(s)	245, 298, 363
ApeKI	GCWGC	3 cut(s)	259, 317, 454
ApoI	RAATTY	2 cut(s)	217, 507
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	2 cut(s)	21, 486
AspLEI	GCGC	3 cut(s)	226, 242, 599
AspS9I	GGNCC	3 cut(s)	175, 245, 298
AsuC2I	CCSGG	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	246, 304, 466
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	567
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	2 cut(s)	311, 650
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	2 cut(s)	564, 663
BfmI	CTRYAG	1 cut(s)	635
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	4 cut(s)	260, 318, 455, 600
BlsI	GCNGC	4 cut(s)	261, 319, 456, 601
Bme1390I	CCNGG	3 cut(s)	311, 362, 650
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	175, 245, 298
BmrFI	CCNGG	3 cut(s)	311, 362, 650
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	495, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 159, 269
Bse1I	ACTGG	2 cut(s)	376, 627
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	311, 650
BseDI	CCNNGG	2 cut(s)	495, 648
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	32, 159, 269
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	308, 594
BseNI	ACTGG	2 cut(s)	376, 627
BseRI	GAGGAG	4 cut(s)	201, 204, 207, 210
BseXI	GCAGC	3 cut(s)	246, 304, 466
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	247, 300, 365
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	32, 159, 269
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	3 cut(s)	247, 300, 365
Bsp143I	GATC	2 cut(s)	381, 667
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	4 cut(s)	10, 200, 467, 600
BspANI	GGCC	3 cut(s)	247, 300, 365
BspCNI	CTCAG	2 cut(s)	307, 595
BspFNI	CGCG	1 cut(s)	597
BspPI	GGATC	1 cut(s)	675
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	376, 627
BssECI	CCNNGG	2 cut(s)	495, 648
BssMI	GATC	2 cut(s)	381, 667
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	311, 650
Bst4CI	ACNGT	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	234, 238, 411, 518
BstDEI	CTNAG	2 cut(s)	294, 603
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	597
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	3 cut(s)	226, 242, 599
BstKTI	GATC	2 cut(s)	384, 670
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	381, 667
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	311, 650
BstNSI	RCATGY	3 cut(s)	236, 240, 413
BstSCI	CCNGG	3 cut(s)	309, 360, 648
BstSFI	CTRYAG	1 cut(s)	635
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	246, 304, 466
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	247, 300, 365
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	310, 620
Cac8I	GCNNGC	4 cut(s)	234, 238, 411, 518
CfoI	GCGC	3 cut(s)	226, 242, 599
Cfr13I	GGNCC	3 cut(s)	175, 245, 298
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	5 cut(s)	233, 237, 410, 496, 674
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	2 cut(s)	294, 603
DpnI	GATC	2 cut(s)	383, 669
DpnII	GATC	2 cut(s)	381, 667
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	2 cut(s)	217, 507
EcoRII	CCWGG	2 cut(s)	309, 648
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	2 cut(s)	238, 411
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	5 cut(s)	236, 240, 413, 499, 677
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	5 cut(s)	232, 236, 409, 495, 673
Fnu4HI	GCNGC	4 cut(s)	260, 318, 455, 600
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	260, 318, 455, 600
FspBI	CTAG	2 cut(s)	564, 663
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	3 cut(s)	225, 241, 598
GluI	GCNGC	4 cut(s)	260, 318, 455, 600
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	247, 300, 365
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	3 cut(s)	226, 242, 599
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	5 cut(s)	236, 240, 413, 499, 677
Hin6I	GCGC	3 cut(s)	224, 240, 597
HinP1I	GCGC	3 cut(s)	224, 240, 597
HindIII	AAGCTT	2 cut(s)	125, 146
HinfI	GANTC	2 cut(s)	274, 463
HpaII	CCGG	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	286, 569
Hpy188I	TCNGA	1 cut(s)	734
Hpy8I	GTNNAC	2 cut(s)	286, 569
Hpy99I	CGWCG	3 cut(s)	74, 268, 597
HpyAV	CCTTC	3 cut(s)	11, 112, 176
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	266, 449
HpyCH4V	TGCA	6 cut(s)	236, 409, 413, 454, 540, 720
HpyF3I	CTNAG	2 cut(s)	294, 603
HpySE526I	ACGT	2 cut(s)	266, 449
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	5 cut(s)	236, 240, 413, 499, 677
HspAI	GCGC	3 cut(s)	224, 240, 597
Kzo9I	GATC	2 cut(s)	381, 667
LmnI	GCTCC	2 cut(s)	197, 396
Lsp1109I	GCAGC	3 cut(s)	246, 304, 466
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	2 cut(s)	564, 663
MaeII	ACGT	2 cut(s)	266, 449
MaeIII	GTNAC	3 cut(s)	305, 400, 557
MalI	GATC	2 cut(s)	383, 669
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	2 cut(s)	381, 667
MboII	GAAGA	2 cut(s)	217, 482
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	6 cut(s)	42, 64, 104, 217, 507, 529
MlyI	GAGTC	2 cut(s)	283, 457
Mph1103I	ATGCAT	2 cut(s)	238, 411
MroXI	GAANNNNTTC	2 cut(s)	21, 486
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	3 cut(s)	311, 362, 650
MvaI	CCWGG	2 cut(s)	311, 650
MvnI	CGCG	1 cut(s)	597
NciI	CCSGG	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	381, 667
NlaIII	CATG	5 cut(s)	236, 240, 413, 499, 677
NmuCI	GTSAC	3 cut(s)	305, 400, 557
NsbI	TGCGCA	1 cut(s)	241
NsiI	ATGCAT	2 cut(s)	238, 411
NspI	RCATGY	3 cut(s)	236, 240, 413
PaeI	GCATGC	3 cut(s)	236, 240, 413
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	21, 486
PkrI	GCNGC	4 cut(s)	261, 319, 456, 601
PleI	GAGTC	2 cut(s)	282, 457
PpsI	GAGTC	2 cut(s)	282, 457
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	309, 648
PspGI	CCWGG	2 cut(s)	309, 648
PspPI	GGNCC	3 cut(s)	175, 245, 298
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	260, 318, 455, 600
Sau3AI	GATC	2 cut(s)	381, 667
Sau96I	GGNCC	3 cut(s)	175, 245, 298
SchI	GAGTC	2 cut(s)	283, 457
ScrFI	CCNGG	3 cut(s)	311, 362, 650
SetI	ASST	7 cut(s)	129, 150, 269, 315, 393, 452, 712
SexAI	ACCWGGT	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	414
SpeI	ACTAGT	1 cut(s)	563
SphI	GCATGC	3 cut(s)	236, 240, 413
Sse9I	AATT	6 cut(s)	42, 64, 104, 217, 507, 529
SsiI	CCGC	4 cut(s)	10, 200, 467, 600
SspMI	CTAG	2 cut(s)	564, 663
StyD4I	CCNGG	3 cut(s)	309, 360, 648
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	269, 452
TaqI	TCGA	3 cut(s)	72, 277, 706
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	6 cut(s)	42, 64, 104, 217, 507, 529
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	602
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	2 cut(s)	310, 627
TseFI	GTSAC	3 cut(s)	305, 400, 557
TseI	GCWGC	3 cut(s)	259, 317, 454
Tsp45I	GTSAC	3 cut(s)	305, 400, 557
TspDTI	ATGAA	2 cut(s)	158, 444
TspGWI	ACGGA	2 cut(s)	440, 588
TspRI	CASTG	2 cut(s)	310, 627
VpaK11BI	GGWCC	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	217, 507
XceI	RCATGY	3 cut(s)	236, 240, 413
XmnI	GAANNNNTTC	2 cut(s)	21, 486
XspI	CTAG	2 cut(s)	564, 663
ZraI	GACGTC	1 cut(s)	267
Zsp2I	ATGCAT	2 cut(s)	238, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.