Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGAAGCTTTCCACATCAGGGTTCGGTCGGCAGGACCAAGAAGCAGGAGGAGGAGGAGGAGGAGGAGCGGAGAAGAAGTGCTTGAATTCGGAGCTATGGCATGCATGCGCAGGACCTCTGGTGTCGCTGCCGACGTCTGGGAGTAGAGTGGTTTACTTTCCTCAGGGCCACAGTGACCAGGTTGCTGCTACTACTAACAAACAAGTTGATGCTCACATACCAAACTACCCGGCCTTGCCTCCCCAGTTGATCTGTCAGCTCCACAATGTCACAATGCATGCAGATGTGGAGACGGATGAAGTATATGCCCAGATGACGTTGCAGCCTTTGACTCCGCAAGAACAAAAGGAAACATTTCTTCCCATGGAGTTGGGAATTCCAAGCAAGCAACCGACAAATTACTTTTGCAAGACACTCACGGCGAGTGACACTAGTACACACGGAGGCTTCTCTGTCCCTCGTCGCGCCGCTGAGAAAGTGTTTCCTCCACTGGATTTCTCGCTACAGCCACCAGCCCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTTCGAGGACAGCCAAAACGGCATCTTCTTACGACAGGTTGGAGTGTGTTTGTTAGTGCCAAAAGGCTTGTTGCAGGAGATTCTGTTCTTTTTATTTGGAATGAAAAGAATCAGCTCCTTTTGGGGATTCGCCGTGCAACTCGACCACAAACTGTGATGCCATCATCTGTTCTGTCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCCGCCCATGCGTCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGAAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACCGCAGGTGAGAGGCAGCCAAGGGTTTCGTTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAGCGTCCTTGGCATCCTGGGGCATCATCAATGCATGATAACAGAGATGAAGCAGCTAATAGCTTAATGTGGCTAAGGGGTGGAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCTTGGATGCAGCAGAGATTGGATTCAACATTTATGGGAAATGACCCCAGTCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATATAGGAAGTGGTGATCAGCTACGACAACATGTAATGCACTTCCAGCAGCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGCGCAACCACAAGTTTCAATGGAGAATCTGCCTCAGCAACTTCTACCACCACAATTTAACAATCAAACAGAGGAAGAGCCGCAGCAACAGCACAACACCTATCATGATGCACGTAAGGTTCAAAGAGAACAACTCCATCAGAGTCAGCAAATGAATTTGCCATCTCCATCATTTTCCAAAACGGACTTTGCTGATTCAAGCACAAAGTTGTCAGGGTCTACTACCTCTAGACAGAACACGCTTGGTTCACTGTGTCCTGAAGGGAATAATAATCTTTTGAACATCTCCAGAGCTGGTCATTCTTTGCCAGCTGAGCAGTTACCTCAACAATCCTGGGCTCCAAAGTTTGCATATGCGCAGGCCAATGACTTTGCTAACCCATTGTCATTCACACCTTTTGATGAGAAAGACAATGCAGTTGAGCAAGAGAACTGTAATTCAGATTCCCAGAATCCTACTCTTTTTGGTGTTAATATAGAATCATCTGGGCTTGTATTCCCCACCACAGTGCCGAACTTTGCCACTTCTTCAAATGATGCTGACATGCCAATGCCTTTAGGGGATTCTGGATTTCAGAGTTCTCTGTATGGTTGCATGCAAGGTTCATCTGAGTTGTTGCACGGTGCAGGTCAAGTTGACCCACCAACCCCAAACTGTACATTTGTCAAGGTGTATAAGTCAGGGTCGGTTGGCCGCTCACTGGACATTTCCCGGTTCAGCAGCTATAATCAGCTGCGGGAAGAACTGGCCCAGATGTTTGGCATTGAGGGGAAGTTGGAAGATTGTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTGCTTCTTCTTGGAGACGACCCATGGGAGTCATTTGTGAACAACGTTTGGTATATCAAGATACTTTCTCCTGAGGATGTGCACAAAATGGGCGACCAAGCAGTTGAATCCTTTAGCCCAAATGTGGGTCAAAGGTTGAATAGCAGTGGAAATGAAACTCAAGACCATATATCTGGGCTACCATCTCTCGGCTCACTTGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

849

Amino Acids

94.42

Weight (kDa)

5.76

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	135 - 236	6.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	259 - 367	8.9e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	284 - 367	7.6e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
AarI	CACCTGC	1 cut(s)	1046
AasI	GACNNNNNNGTC	2 cut(s)	940, 1146
AatII	GACGTC	1 cut(s)	137
Acc16I	TGCGCA	2 cut(s)	109, 1869
Acc36I	ACCTGC	2 cut(s)	1046, 2129
AccBSI	CCGCTC	2 cut(s)	68, 2208
AccI	GTMKAC	2 cut(s)	1730, 2328
AccII	CGCG	1 cut(s)	465
AciI	CCGC	9 cut(s)	68, 335, 468, 783, 1053, 1484, 1592, 2206, 2248
AclI	AACGTT	1 cut(s)	2388
AclWI	GGATC	3 cut(s)	543, 986, 999
AcoI	YGGCCR	2 cut(s)	1004, 2203
AcsI	RAATTY	4 cut(s)	85, 375, 1009, 1666
AcuI	CTGAAG	5 cut(s)	957, 1163, 1406, 1415, 1791
AcvI	CACGTG	1 cut(s)	896
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	7 cut(s)	436, 959, 967, 1118, 1337, 1427, 2170
AfiI	CCNNNNNNNGG	6 cut(s)	18, 137, 2212, 2467, 2468, 2531
AflIII	ACRYGT	3 cut(s)	893, 895, 1396
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	5 cut(s)	177, 516, 1159, 1338, 1844
AleI	CACNNNNGTG	2 cut(s)	894, 2018
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
Alw21I	GWGCWC	1 cut(s)	2427
Alw26I	GTCTC	3 cut(s)	284, 926, 2352
Alw44I	GTGCAC	1 cut(s)	2423
AlwI	GGATC	3 cut(s)	543, 986, 999
AoxI	GGCC	7 cut(s)	166, 231, 1004, 1341, 1872, 2203, 2259
ApaLI	GTGCAC	1 cut(s)	2423
ApoI	RAATTY	4 cut(s)	85, 375, 1009, 1666
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	4 cut(s)	110, 467, 1516, 1870
AspS9I	GGNCC	4 cut(s)	34, 113, 166, 2260
AsuC2I	CCSGG	3 cut(s)	230, 1440, 2224
AsuHPI	GGTGA	2 cut(s)	1070, 1391
AvaII	GGWCC	2 cut(s)	34, 113
AxyI	CCTNAGG	2 cut(s)	162, 2415
BaeGI	GKGCMC	1 cut(s)	2427
BaeI	ACNNNNGTAYC	2 cut(s)	949, 982
BalI	TGGCCA	1 cut(s)	1006
BamHI	GGATCC	1 cut(s)	991
BanII	GRGCYC	1 cut(s)	1852
BbrPI	CACGTG	1 cut(s)	896
BbsI	GAAGAC	2 cut(s)	786, 1235
Bbv12I	GWGCWC	1 cut(s)	2427
BbvCI	CCTCAGC	1 cut(s)	1545
BccI	CCATC	7 cut(s)	739, 850, 1129, 1656, 1681, 1687, 2533
BceAI	ACGGC	3 cut(s)	435, 605, 687
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	5 cut(s)	179, 518, 1161, 1340, 1846
BclI	TGATCA	1 cut(s)	1381
BcnI	CCSGG	3 cut(s)	230, 1440, 2224
BcoDI	GTCTC	3 cut(s)	284, 926, 2352
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	4 cut(s)	432, 531, 837, 1740
BfmI	CTRYAG	2 cut(s)	503, 1508
BfuAI	ACCTGC	2 cut(s)	1046, 2129
BglI	GCCNNNNNGGC	2 cut(s)	589, 1349
BlpI	GCTNAGC	1 cut(s)	1824
Bme1390I	CCNGG	8 cut(s)	179, 230, 518, 1161, 1340, 1440, 1846, 2224
Bme18I	GGWCC	2 cut(s)	34, 113
BmgT120I	GGNCC	4 cut(s)	34, 113, 166, 2260
BmiI	GGNNCC	2 cut(s)	993, 1851
BmrFI	CCNGG	8 cut(s)	179, 230, 518, 1161, 1340, 1440, 1846, 2224
BmrI	ACTGGG	2 cut(s)	238, 1320
BmuI	ACTGGG	2 cut(s)	238, 1320
BoxI	GACNNNNGTC	1 cut(s)	1326
BpiI	GAAGAC	2 cut(s)	786, 1235
BplI	GAGNNNNNCTC	2 cut(s)	1629, 1661
BpmI	CTGGAG	2 cut(s)	1251, 1783
Bpu10I	CCTNAGC	2 cut(s)	1217, 1545
Bpu1102I	GCTNAGC	1 cut(s)	1824
BpuEI	CTTGAG	1 cut(s)	2487
BpuMI	CCSGG	3 cut(s)	230, 1440, 2224
BsaAI	YACGTR	2 cut(s)	896, 1625
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	9 cut(s)	363, 516, 830, 1070, 1151, 1160, 1280, 1845, 2366
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 639, 669
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 137, 2212, 2467, 2468, 2531
Bse1I	ACTGG	7 cut(s)	244, 495, 979, 1234, 1326, 2217, 2262
Bse21I	CCTNAGG	2 cut(s)	162, 2415
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	5 cut(s)	179, 518, 1161, 1340, 1846
BseDI	CCNNGG	9 cut(s)	363, 516, 830, 1070, 1151, 1160, 1280, 1845, 2366
BseGI	GGATG	7 cut(s)	301, 915, 927, 1048, 1156, 1290, 2425
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	6 cut(s)	18, 137, 2212, 2467, 2468, 2531
BseMII	CTCAG	7 cut(s)	176, 462, 837, 1559, 1815, 2112, 2406
BseNI	ACTGG	7 cut(s)	244, 495, 979, 1234, 1326, 2217, 2262
BseRI	GAGGAG	6 cut(s)	63, 66, 69, 72, 75, 78
BseSI	GKGCMC	1 cut(s)	2427
BsgI	GTGCAG	1 cut(s)	2157
Bsh1236I	CGCG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	7 cut(s)	168, 233, 1006, 1343, 1874, 2205, 2261
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	2427
BsiSI	CCGG	3 cut(s)	230, 1439, 2224
BslFI	GGGAC	2 cut(s)	440, 1478
BslI	CCNNNNNNNGG	6 cut(s)	18, 137, 2212, 2467, 2468, 2531
BsmAI	GTCTC	3 cut(s)	284, 926, 2352
BsmBI	CGTCTC	2 cut(s)	284, 2352
BsmFI	GGGAC	2 cut(s)	440, 1478
BsnI	GGCC	7 cut(s)	168, 233, 1006, 1343, 1874, 2205, 2261
Bsp1286I	GDGCHC	2 cut(s)	1852, 2427
Bsp1407I	TGTACA	1 cut(s)	2168
Bsp143I	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
Bsp1720I	GCTNAGC	1 cut(s)	1824
Bsp19I	CCATGG	2 cut(s)	363, 2366
BspACI	CCGC	9 cut(s)	68, 335, 468, 783, 1053, 1484, 1592, 2206, 2248
BspANI	GGCC	7 cut(s)	168, 233, 1006, 1343, 1874, 2205, 2261
BspCNI	CTCAG	7 cut(s)	175, 463, 838, 1558, 1816, 2113, 2407
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	1615
BspLI	GGNNCC	2 cut(s)	993, 1851
BspMAI	CTGCAG	1 cut(s)	1512
BspMI	ACCTGC	2 cut(s)	1046, 2129
BspPI	GGATC	3 cut(s)	543, 986, 999
BspQI	GCTCTTC	1 cut(s)	1581
BsrBI	CCGCTC	2 cut(s)	68, 2208
BsrGI	TGTACA	1 cut(s)	2168
BsrI	ACTGG	7 cut(s)	244, 495, 979, 1234, 1326, 2217, 2262
BssECI	CCNNGG	9 cut(s)	363, 516, 830, 1070, 1151, 1160, 1280, 1845, 2366
BssMI	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	6 cut(s)	363, 830, 1070, 1151, 1280, 2366
Bst2UI	CCWGG	5 cut(s)	179, 518, 1161, 1340, 1846
Bst4CI	ACNGT	9 cut(s)	173, 724, 817, 1128, 1764, 1946, 2020, 2135, 2168
Bst6I	CTCTTC	3 cut(s)	933, 1425, 1581
BstACI	GRCGYC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	2168
BstBAI	YACGTR	2 cut(s)	896, 1625
BstDEI	CTNAG	9 cut(s)	162, 471, 846, 1217, 1545, 1824, 2121, 2300, 2415
BstDSI	CCRYGG	2 cut(s)	363, 2366
BstF5I	GGATG	7 cut(s)	301, 915, 927, 1048, 1156, 1290, 2425
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	4 cut(s)	110, 467, 1516, 1870
BstKTI	GATC	7 cut(s)	252, 538, 988, 994, 1025, 1384, 2306
BstMAI	GTCTC	3 cut(s)	284, 926, 2352
BstMBI	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
BstMCI	CGRYCG	1 cut(s)	28
BstNI	CCWGG	5 cut(s)	179, 518, 1161, 1340, 1846
BstNSI	RCATGY	7 cut(s)	104, 108, 281, 760, 1400, 2059, 2110
BstPAI	GACNNNNGTC	1 cut(s)	1326
BstSCI	CCNGG	8 cut(s)	177, 228, 516, 1159, 1338, 1438, 1844, 2222
BstSFI	CTRYAG	2 cut(s)	503, 1508
BstSLI	GKGCMC	1 cut(s)	2427
BstUI	CGCG	1 cut(s)	465
BstV2I	GAAGAC	2 cut(s)	786, 1235
BstX2I	RGATCY	2 cut(s)	535, 991
BstXI	CCANNNNNNTGG	4 cut(s)	370, 1268, 2270, 2516
BstYI	RGATCY	2 cut(s)	535, 991
Bsu36I	CCTNAGG	2 cut(s)	162, 2415
BsuRI	GGCC	7 cut(s)	168, 233, 1006, 1343, 1874, 2205, 2261
BtgI	CCRYGG	2 cut(s)	363, 2366
BtsCI	GGATG	7 cut(s)	301, 915, 927, 1048, 1156, 1290, 2425
BtsI	GCAGTG	1 cut(s)	2494
BtsIMutI	CAGTG	7 cut(s)	178, 488, 1124, 1760, 2025, 2210, 2494
BveI	ACCTGC	2 cut(s)	1046, 2129
CciI	TCATGA	1 cut(s)	1615
CfoI	GCGC	4 cut(s)	110, 467, 1516, 1870
Cfr13I	GGNCC	4 cut(s)	34, 113, 166, 2260
CseI	GACGC	2 cut(s)	780, 1136
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	7 cut(s)	435, 958, 966, 1117, 1336, 1426, 2169
CviQI	GTAC	7 cut(s)	435, 958, 966, 1117, 1336, 1426, 2169
DdeI	CTNAG	9 cut(s)	162, 471, 846, 1217, 1545, 1824, 2121, 2300, 2415
DpnI	GATC	7 cut(s)	251, 537, 987, 993, 1024, 1383, 2305
DpnII	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
DrdI	GACNNNNNNGTC	2 cut(s)	940, 1146
DseDI	GACNNNNNNGTC	2 cut(s)	940, 1146
EaeI	YGGCCR	2 cut(s)	1004, 2203
Eam1104I	CTCTTC	3 cut(s)	933, 1425, 1581
EarI	CTCTTC	3 cut(s)	933, 1425, 1581
Eco130I	CCWWGG	6 cut(s)	363, 830, 1070, 1151, 1280, 2366
Eco24I	GRGCYC	1 cut(s)	1852
Eco47I	GGWCC	2 cut(s)	34, 113
Eco57I	CTGAAG	5 cut(s)	957, 1163, 1406, 1415, 1791
Eco72I	CACGTG	1 cut(s)	896
Eco81I	CCTNAGG	2 cut(s)	162, 2415
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	85, 375
EcoRII	CCWGG	5 cut(s)	177, 516, 1159, 1338, 1844
EcoT14I	CCWWGG	6 cut(s)	363, 830, 1070, 1151, 1280, 2366
EcoT22I	ATGCAT	3 cut(s)	106, 279, 1179
EcoT38I	GRGCYC	1 cut(s)	1852
ErhI	CCWWGG	6 cut(s)	363, 830, 1070, 1151, 1280, 2366
Esp3I	CGTCTC	2 cut(s)	284, 2352
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 2283, 2315
FaqI	GGGAC	2 cut(s)	440, 1478
FauI	CCCGC	1 cut(s)	2241
FauNDI	CATATG	1 cut(s)	1864
FbaI	TGATCA	1 cut(s)	1381
FblI	GTMKAC	2 cut(s)	1730, 2328
FokI	GGATG	7 cut(s)	308, 922, 934, 1055, 1143, 1297, 2432
FriOI	GRGCYC	1 cut(s)	1852
FspBI	CTAG	4 cut(s)	432, 531, 837, 1740
FspI	TGCGCA	2 cut(s)	109, 1869
GlaI	GCGC	4 cut(s)	109, 466, 1515, 1869
GsuI	CTGGAG	2 cut(s)	1251, 1783
HaeIII	GGCC	7 cut(s)	168, 233, 1006, 1343, 1874, 2205, 2261
HapII	CCGG	3 cut(s)	230, 1439, 2224
HgaI	GACGC	2 cut(s)	780, 1136
HhaI	GCGC	4 cut(s)	110, 467, 1516, 1870
Hin1I	GRCGYC	1 cut(s)	134
Hin6I	GCGC	4 cut(s)	108, 465, 1514, 1868
HinP1I	GCGC	4 cut(s)	108, 465, 1514, 1868
HincII	GTYRAC	3 cut(s)	1050, 2149, 2329
HindII	GTYRAC	3 cut(s)	1050, 2149, 2329
HindIII	AAGCTT	1 cut(s)	5
HpaII	CCGG	3 cut(s)	230, 1439, 2224
HphI	GGTGA	2 cut(s)	1070, 1391
Hpy188I	TCNGA	8 cut(s)	91, 847, 921, 953, 1653, 1954, 2088, 2122
Hpy188III	TCNNGA	9 cut(s)	989, 1616, 1740, 1769, 1800, 2079, 2401, 2414, 2504
Hpy99I	CGWCG	3 cut(s)	136, 465, 2330
HpyAV	CCTTC	4 cut(s)	948, 1145, 1439, 1766
HpyCH4III	ACNGT	9 cut(s)	173, 724, 817, 1128, 1764, 1946, 2020, 2135, 2168
HpyCH4IV	ACGT	5 cut(s)	134, 317, 895, 1624, 2388
HpyF3I	CTNAG	9 cut(s)	162, 471, 846, 1217, 1545, 1824, 2121, 2300, 2415
HpySE526I	ACGT	5 cut(s)	134, 317, 895, 1624, 2388
Hsp92I	GRCGYC	1 cut(s)	134
HspAI	GCGC	4 cut(s)	108, 465, 1514, 1868
Ksp22I	TGATCA	1 cut(s)	1381
Kzo9I	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
LguI	GCTCTTC	1 cut(s)	1581
LmnI	GCTCC	5 cut(s)	65, 91, 264, 690, 1855
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	4 cut(s)	432, 531, 837, 1740
MaeII	ACGT	5 cut(s)	134, 317, 895, 1624, 2388
MaeIII	GTNAC	4 cut(s)	173, 268, 425, 1830
MalI	GATC	7 cut(s)	251, 537, 987, 993, 1024, 1383, 2305
MbiI	CCGCTC	2 cut(s)	68, 2208
MboI	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
MflI	RGATCY	2 cut(s)	535, 991
MhlI	GDGCHC	2 cut(s)	1852, 2427
MlsI	TGGCCA	1 cut(s)	1006
MluCI	AATT	8 cut(s)	85, 375, 397, 1009, 1479, 1565, 1666, 1948
MluNI	TGGCCA	1 cut(s)	1006
MlyI	GAGTC	5 cut(s)	325, 950, 1055, 1663, 2381
MmeI	TCCRAC	2 cut(s)	590, 2268
Mox20I	TGGCCA	1 cut(s)	1006
Mph1103I	ATGCAT	3 cut(s)	106, 279, 1179
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	1006
MseI	TTAA	4 cut(s)	876, 1208, 1569, 1983
MslI	CAYNNNNRTG	4 cut(s)	282, 894, 2018, 2060
Msp20I	TGGCCA	1 cut(s)	1006
MspA1I	CMGCKG	4 cut(s)	470, 1465, 1823, 2245
MspI	CCGG	3 cut(s)	230, 1439, 2224
MspR9I	CCNGG	8 cut(s)	179, 230, 518, 1161, 1340, 1440, 1846, 2224
MvaI	CCWGG	5 cut(s)	179, 518, 1161, 1340, 1846
MvnI	CGCG	1 cut(s)	465
NciI	CCSGG	3 cut(s)	230, 1440, 2224
NcoI	CCATGG	2 cut(s)	363, 2366
NdeI	CATATG	1 cut(s)	1864
NdeII	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
NlaIV	GGNNCC	2 cut(s)	993, 1851
NmeAIII	GCCGAG	1 cut(s)	2511
NmuCI	GTSAC	3 cut(s)	173, 268, 425
NsbI	TGCGCA	2 cut(s)	109, 1869
NsiI	ATGCAT	3 cut(s)	106, 279, 1179
NspI	RCATGY	7 cut(s)	104, 108, 281, 760, 1400, 2059, 2110
OliI	CACNNNNGTG	2 cut(s)	894, 2018
PaeI	GCATGC	5 cut(s)	104, 108, 281, 760, 2110
PagI	TCATGA	1 cut(s)	1615
PaqCI	CACCTGC	1 cut(s)	1046
PciI	ACATGT	1 cut(s)	1396
PciSI	GCTCTTC	1 cut(s)	1581
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 1144
PdmI	GAANNNNTTC	1 cut(s)	354
PleI	GAGTC	5 cut(s)	325, 949, 1054, 1662, 2380
PmaCI	CACGTG	1 cut(s)	896
PmlI	CACGTG	1 cut(s)	896
PpsI	GAGTC	5 cut(s)	325, 949, 1054, 1662, 2380
Ppu21I	YACGTR	2 cut(s)	896, 1625
PpuMI	RGGWCCY	1 cut(s)	113
PscI	ACATGT	1 cut(s)	1396
PshAI	GACNNNNGTC	1 cut(s)	1326
PsiI	TTATAA	1 cut(s)	825
Psp1406I	AACGTT	1 cut(s)	2388
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	5 cut(s)	177, 516, 1159, 1338, 1844
PspCI	CACGTG	1 cut(s)	896
PspGI	CCWGG	5 cut(s)	177, 516, 1159, 1338, 1844
PspN4I	GGNNCC	2 cut(s)	993, 1851
PspPI	GGNCC	4 cut(s)	34, 113, 166, 2260
PspPPI	RGGWCCY	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	1512
PsuI	RGATCY	2 cut(s)	535, 991
PvuII	CAGCTG	3 cut(s)	1465, 1823, 2245
RsaI	GTAC	7 cut(s)	436, 959, 967, 1118, 1337, 1427, 2170
RsaNI	GTAC	7 cut(s)	435, 958, 966, 1117, 1336, 1426, 2169
RseI	CAYNNNNRTG	4 cut(s)	282, 894, 2018, 2060
SalI	GTCGAC	1 cut(s)	2327
SapI	GCTCTTC	1 cut(s)	1581
SaqAI	TTAA	4 cut(s)	876, 1208, 1569, 1983
Sau3AI	GATC	7 cut(s)	249, 535, 985, 991, 1022, 1381, 2303
Sau96I	GGNCC	4 cut(s)	34, 113, 166, 2260
SchI	GAGTC	5 cut(s)	325, 950, 1055, 1663, 2381
ScrFI	CCNGG	8 cut(s)	179, 230, 518, 1161, 1340, 1440, 1846, 2224
SduI	GDGCHC	2 cut(s)	1852, 2427
SexAI	ACCWGGT	1 cut(s)	177
SfcI	CTRYAG	2 cut(s)	503, 1508
SinI	GGWCC	2 cut(s)	34, 113
SmiMI	CAYNNNNRTG	4 cut(s)	282, 894, 2018, 2060
SmlI	CTYRAG	2 cut(s)	2502, 2540
SmoI	CTYRAG	2 cut(s)	2502, 2540
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	5 cut(s)	104, 108, 281, 760, 2110
Sse9I	AATT	8 cut(s)	85, 375, 397, 1009, 1479, 1565, 1666, 1948
SsiI	CCGC	9 cut(s)	68, 335, 468, 783, 1053, 1484, 1592, 2206, 2248
SspMI	CTAG	4 cut(s)	432, 531, 837, 1740
StyD4I	CCNGG	8 cut(s)	177, 228, 516, 1159, 1338, 1438, 1844, 2222
StyI	CCWWGG	6 cut(s)	363, 830, 1070, 1151, 1280, 2366
TaaI	ACNGT	9 cut(s)	173, 724, 817, 1128, 1764, 1946, 2020, 2135, 2168
TaiI	ACGT	5 cut(s)	137, 320, 898, 1627, 2391
TaqI	TCGA	4 cut(s)	574, 712, 1138, 2328
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	8 cut(s)	85, 375, 397, 1009, 1479, 1565, 1666, 1948
TatI	WGTACW	2 cut(s)	434, 2168
TauI	GCSGC	4 cut(s)	470, 785, 1594, 2208
Tru1I	TTAA	4 cut(s)	876, 1208, 1569, 1983
Tru9I	TTAA	4 cut(s)	876, 1208, 1569, 1983
TscAI	CASTG	7 cut(s)	178, 495, 1131, 1767, 2025, 2217, 2494
TseFI	GTSAC	3 cut(s)	173, 268, 425
Tsp45I	GTSAC	3 cut(s)	173, 268, 425
TspDTI	ATGAA	8 cut(s)	17, 312, 687, 1206, 1268, 1679, 2106, 2511
TspGWI	ACGGA	3 cut(s)	308, 456, 1709
TspRI	CASTG	7 cut(s)	178, 495, 1131, 1767, 2025, 2217, 2494
VneI	GTGCAC	1 cut(s)	2423
VpaK11BI	GGWCC	2 cut(s)	34, 113
XapI	RAATTY	4 cut(s)	85, 375, 1009, 1666
XbaI	TCTAGA	1 cut(s)	1739
XceI	RCATGY	7 cut(s)	104, 108, 281, 760, 1400, 2059, 2110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1014
XmiI	GTMKAC	2 cut(s)	1730, 2328
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	432, 531, 837, 1740
ZraI	GACGTC	1 cut(s)	135
Zsp2I	ATGCAT	3 cut(s)	106, 279, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.