Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Forward (+)

15248276 .. 15258944

Gene Structure 10669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGAAGATTTCCACATCAGGGTTCGGTCAGCAGGAGCAAGGAGCAGGAGGAGGAGGAGCGGAGAAGAAGTGCTTGAATTCGGAGCTATGGCATGCATGCGCAGGGCCTCTGGTGTCGCTGCCGACGTCTGGGAGTCGAGTGGTTTACTTTCCTCAGGGCCACAGTGACCAGGTTGCTGCTACTACTAACAAACAAGTTGATGCTCACATACCAAACTACCCGGCCTTGCCTCCCCAGTTGATCTGTCAGCTCCACAATGTCACAATGCATGCAGATGTGGAGACGGATGAAGTATATGCCCAGATGACGTTGCAGCCTTTGACTCCGCAAGAACAAAAGGAAACATTTCTTCCCATGGAGTTGGGAATTCCAAGCAAGCAACCAACAAATTACTTTTGCAAGACACTCACGGCTAGTGACACTAGTACACACGGAGGCTTCTCTGTCCCCCGTCGCGCTGCTGAGAAAGTGTTTCCTCCACTGGATTTCTCGCTACAGCCACCAGCCCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTTCGAGGACAGCCAAAACGGCATCTTCTTACGACAGGTTGGAGTGTGTTTGTTAGTGCCAAAAGGCTTGTTGCAGGAGATTCTGTTCTTTTTATTTGGAATGAAAAGAATCAGCTCCTTTTGGGGATTCGCCGTGCTACTCGACCACAAACTGTGATGCCATCATCTGTTCTTTCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCATCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGAAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACCGCAGGTGAGAGGCAGCCAAGGGTTTCGTTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAGCGTCCTTGGCATCCTGGGGCATCATCAATGCATGATAACAGAGATGAAGCAGCTAATAGCTTAATGTGGCTAAGGGGTGGAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCTTGGATGCAGCAGAGATTGGATTCAACATTGATGGGAAATGACCCCAATCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATATAGGAAGTGGAGATCAGCTACGACAACATGTAATGCACTTCCAGCAGCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGTGCAACCACAAGTTTCAATGGAGAATCTGCCTCAGCAACTTTTACCACCACAATTTAACAATCAAACAGAGGAAGAGCCGCAGCAACAGCACAACACCTATCATGATGCACGTAAGGTTCAAAGGGAACAACTCCATCAGAGTCAGCATATGAATTTGCCATCTCCATCATTTTCCAAAACGGACTTTGCTGATTCAAGCACAAAGTTGTCAGGGTCCACTACCTCTAGACAGAACATGCTTGGTTCACTGTGTCCTGAAGGGAATAATAATCTTTTGAACATCTCCAGAGCTGGTCATTCTTTGCCAGCTGAGCAGTTACCTCAACAATCGTGGGCTCCAAAGTTTGCATATGCGCAGGCCAATGACTTTGCCAACCCAATGTCATTCACACCTTTTGATGAGAAAGACAATGCAGTTGAGCAAGAGAATTGTAATTCAGATTCCCAGAATCCTACTCTTTTTGGTGTTAATATAGAATCATCTGGGCTTGTATTCCCCACCACAGTACCGAACTTTGCCACTTCTTCAAATGATGCTGACATGCCAATGCCTTTAGGGGATTCTGGATTTCAGAGTTCTCTGTATGGTTGCATGCAAGGTTCATCTGAGTTGTTGCACGGTGCAGGTCAAGTTGACCCACCAACGCCAAACTGTACATTTGTCAAGGTGTATAAATCAGGGTCGGTTGGCCGCTCACTGGACATTTCCCGGTTCAGCAGCTATAATCAGCTGCGGGAAGAACTGGCCCAGATGTTTGGCATTGAGGGGAAGTTGGAAGATTGTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTGCTTCTTCTTGGAGACGACCCATGGGAGTCATTTGTGAACAACGTTTGGTATATCAAGATACTTTCTCCTGAGGATGTGCACAAAATGGGCGACCAAGCAGTTGAATCCTTTAGCCCAAATGTGGGTCAAAGGTTGAATAGCAGTGGAAATGAAACTCAAGACCATATATCTGGGCTACCATCTCTCGGCTCACTTGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

846

Amino Acids

94.24

Weight (kDa)

5.79

Isoelectric Point (pI)

64.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	132 - 233	6.3e-22	B3 DNA binding domain
BRWD_AD	PF25313	256 - 364	8.9e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	281 - 364	7.6e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AarI	CACCTGC	2 cut(s)	1037, 1492
AasI	GACNNNNNNGTC	2 cut(s)	931, 1137
AatII	GACGTC	1 cut(s)	128
Acc16I	TGCGCA	2 cut(s)	100, 1860
Acc36I	ACCTGC	3 cut(s)	1037, 1492, 2120
AccBSI	CCGCTC	2 cut(s)	59, 2199
AccI	GTMKAC	1 cut(s)	2319
AccII	CGCG	1 cut(s)	456
AciI	CCGC	7 cut(s)	59, 326, 1044, 1475, 1583, 2197, 2239
AclI	AACGTT	1 cut(s)	2379
AclWI	GGATC	3 cut(s)	534, 977, 990
AcoI	YGGCCR	2 cut(s)	995, 2194
AcsI	RAATTY	4 cut(s)	76, 366, 1000, 1657
AcuI	CTGAAG	5 cut(s)	948, 1154, 1397, 1406, 1782
AcvI	CACGTG	1 cut(s)	887
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	8 cut(s)	427, 950, 958, 1109, 1328, 1418, 2013, 2161
AfiI	CCNNNNNNNGG	6 cut(s)	18, 128, 2203, 2458, 2459, 2522
AflIII	ACRYGT	3 cut(s)	884, 886, 1387
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	4 cut(s)	168, 507, 1150, 1329
AleI	CACNNNNGTG	1 cut(s)	885
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
Alw21I	GWGCWC	1 cut(s)	2418
Alw26I	GTCTC	3 cut(s)	275, 917, 2343
Alw44I	GTGCAC	1 cut(s)	2414
AlwI	GGATC	3 cut(s)	534, 977, 990
AoxI	GGCC	8 cut(s)	104, 157, 222, 995, 1332, 1863, 2194, 2250
ApaLI	GTGCAC	1 cut(s)	2414
ApoI	RAATTY	4 cut(s)	76, 366, 1000, 1657
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	101, 458, 1861
AspS9I	GGNCC	4 cut(s)	104, 157, 1719, 2251
AsuC2I	CCSGG	3 cut(s)	221, 1431, 2215
AsuHPI	GGTGA	1 cut(s)	1061
AvaII	GGWCC	1 cut(s)	1719
AxyI	CCTNAGG	2 cut(s)	153, 2406
BaeGI	GKGCMC	1 cut(s)	2418
BaeI	ACNNNNGTAYC	4 cut(s)	940, 973, 1995, 2028
BalI	TGGCCA	1 cut(s)	997
BamHI	GGATCC	1 cut(s)	982
BanII	GRGCYC	1 cut(s)	1843
BbrPI	CACGTG	1 cut(s)	887
BbsI	GAAGAC	1 cut(s)	1226
Bbv12I	GWGCWC	1 cut(s)	2418
BbvCI	CCTCAGC	1 cut(s)	1536
BccI	CCATC	8 cut(s)	730, 841, 1120, 1297, 1647, 1672, 1678, 2524
BceAI	ACGGC	3 cut(s)	426, 596, 678
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	4 cut(s)	170, 509, 1152, 1331
BcnI	CCSGG	3 cut(s)	221, 1431, 2215
BcoDI	GTCTC	3 cut(s)	275, 917, 2343
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	5 cut(s)	414, 423, 522, 828, 1731
BfmI	CTRYAG	2 cut(s)	494, 1499
BfuAI	ACCTGC	3 cut(s)	1037, 1492, 2120
BglI	GCCNNNNNGGC	2 cut(s)	580, 1340
BlpI	GCTNAGC	1 cut(s)	1815
Bme1390I	CCNGG	7 cut(s)	170, 221, 509, 1152, 1331, 1431, 2215
Bme18I	GGWCC	1 cut(s)	1719
BmgT120I	GGNCC	4 cut(s)	104, 157, 1719, 2251
BmiI	GGNNCC	3 cut(s)	984, 1720, 1842
BmrFI	CCNGG	7 cut(s)	170, 221, 509, 1152, 1331, 1431, 2215
BmrI	ACTGGG	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	1226
BpmI	CTGGAG	2 cut(s)	1242, 1774
Bpu10I	CCTNAGC	2 cut(s)	1208, 1536
Bpu1102I	GCTNAGC	1 cut(s)	1815
BpuEI	CTTGAG	1 cut(s)	2478
BpuMI	CCSGG	3 cut(s)	221, 1431, 2215
BsaAI	YACGTR	2 cut(s)	887, 1616
BsaBI	GATNNNNATC	1 cut(s)	981
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	8 cut(s)	354, 507, 821, 1061, 1142, 1151, 1271, 2357
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 630, 660
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 128, 2203, 2458, 2459, 2522
Bse1I	ACTGG	6 cut(s)	235, 486, 970, 1225, 2208, 2253
Bse21I	CCTNAGG	2 cut(s)	153, 2406
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	4 cut(s)	170, 509, 1152, 1331
BseDI	CCNNGG	8 cut(s)	354, 507, 821, 1061, 1142, 1151, 1271, 2357
BseGI	GGATG	7 cut(s)	292, 906, 918, 1039, 1147, 1281, 2416
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	6 cut(s)	18, 128, 2203, 2458, 2459, 2522
BseMII	CTCAG	7 cut(s)	167, 453, 828, 1550, 1806, 2103, 2397
BseNI	ACTGG	6 cut(s)	235, 486, 970, 1225, 2208, 2253
BseRI	GAGGAG	3 cut(s)	63, 66, 69
BseSI	GKGCMC	1 cut(s)	2418
BsgI	GTGCAG	1 cut(s)	2148
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	8 cut(s)	106, 159, 224, 997, 1334, 1865, 2196, 2252
BsiHKAI	GWGCWC	1 cut(s)	2418
BsiSI	CCGG	3 cut(s)	221, 1430, 2215
BslFI	GGGAC	2 cut(s)	431, 1469
BslI	CCNNNNNNNGG	6 cut(s)	18, 128, 2203, 2458, 2459, 2522
BsmAI	GTCTC	3 cut(s)	275, 917, 2343
BsmBI	CGTCTC	2 cut(s)	275, 2343
BsmFI	GGGAC	2 cut(s)	431, 1469
BsnI	GGCC	8 cut(s)	106, 159, 224, 997, 1334, 1865, 2196, 2252
Bsp1286I	GDGCHC	2 cut(s)	1843, 2418
Bsp1407I	TGTACA	1 cut(s)	2159
Bsp143I	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
Bsp1720I	GCTNAGC	1 cut(s)	1815
Bsp19I	CCATGG	2 cut(s)	354, 2357
BspACI	CCGC	7 cut(s)	59, 326, 1044, 1475, 1583, 2197, 2239
BspANI	GGCC	8 cut(s)	106, 159, 224, 997, 1334, 1865, 2196, 2252
BspCNI	CTCAG	7 cut(s)	166, 454, 829, 1549, 1807, 2104, 2398
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	1606
BspLI	GGNNCC	3 cut(s)	984, 1720, 1842
BspMAI	CTGCAG	1 cut(s)	1503
BspMI	ACCTGC	3 cut(s)	1037, 1492, 2120
BspPI	GGATC	3 cut(s)	534, 977, 990
BspQI	GCTCTTC	1 cut(s)	1572
BsrBI	CCGCTC	2 cut(s)	59, 2199
BsrGI	TGTACA	1 cut(s)	2159
BsrI	ACTGG	6 cut(s)	235, 486, 970, 1225, 2208, 2253
BssECI	CCNNGG	8 cut(s)	354, 507, 821, 1061, 1142, 1151, 1271, 2357
BssMI	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	6 cut(s)	354, 821, 1061, 1142, 1271, 2357
Bst2UI	CCWGG	4 cut(s)	170, 509, 1152, 1331
Bst4CI	ACNGT	8 cut(s)	164, 715, 808, 1119, 1755, 2011, 2126, 2159
Bst6I	CTCTTC	3 cut(s)	924, 1416, 1572
BstACI	GRCGYC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	2159
BstBAI	YACGTR	2 cut(s)	887, 1616
BstC8I	GCNNGC	9 cut(s)	93, 97, 270, 377, 749, 1812, 1863, 2099, 2303
BstDEI	CTNAG	9 cut(s)	153, 462, 837, 1208, 1536, 1815, 2112, 2291, 2406
BstDSI	CCRYGG	2 cut(s)	354, 2357
BstF5I	GGATG	7 cut(s)	292, 906, 918, 1039, 1147, 1281, 2416
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	3 cut(s)	101, 458, 1861
BstKTI	GATC	7 cut(s)	243, 529, 979, 985, 1016, 1375, 2297
BstMAI	GTCTC	3 cut(s)	275, 917, 2343
BstMBI	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
BstNI	CCWGG	4 cut(s)	170, 509, 1152, 1331
BstNSI	RCATGY	8 cut(s)	95, 99, 272, 751, 1391, 1744, 2050, 2101
BstSCI	CCNGG	7 cut(s)	168, 219, 507, 1150, 1329, 1429, 2213
BstSFI	CTRYAG	2 cut(s)	494, 1499
BstSLI	GKGCMC	1 cut(s)	2418
BstUI	CGCG	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	1226
BstX2I	RGATCY	2 cut(s)	526, 982
BstXI	CCANNNNNNTGG	4 cut(s)	361, 1259, 2261, 2507
BstYI	RGATCY	2 cut(s)	526, 982
Bsu36I	CCTNAGG	2 cut(s)	153, 2406
BsuRI	GGCC	8 cut(s)	106, 159, 224, 997, 1334, 1865, 2196, 2252
BtgI	CCRYGG	2 cut(s)	354, 2357
BtsCI	GGATG	7 cut(s)	292, 906, 918, 1039, 1147, 1281, 2416
BtsI	GCAGTG	1 cut(s)	2485
BtsIMutI	CAGTG	6 cut(s)	169, 479, 1115, 1751, 2201, 2485
BveI	ACCTGC	3 cut(s)	1037, 1492, 2120
Cac8I	GCNNGC	9 cut(s)	93, 97, 270, 377, 749, 1812, 1863, 2099, 2303
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	3 cut(s)	101, 458, 1861
Cfr13I	GGNCC	4 cut(s)	104, 157, 1719, 2251
CseI	GACGC	1 cut(s)	1127
CsiI	ACCWGGT	1 cut(s)	168
Csp6I	GTAC	8 cut(s)	426, 949, 957, 1108, 1327, 1417, 2012, 2160
CspCI	CAANNNNNGTGG	2 cut(s)	1817, 1852
CviQI	GTAC	8 cut(s)	426, 949, 957, 1108, 1327, 1417, 2012, 2160
DdeI	CTNAG	9 cut(s)	153, 462, 837, 1208, 1536, 1815, 2112, 2291, 2406
DpnI	GATC	7 cut(s)	242, 528, 978, 984, 1015, 1374, 2296
DpnII	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
DrdI	GACNNNNNNGTC	2 cut(s)	931, 1137
DseDI	GACNNNNNNGTC	2 cut(s)	931, 1137
EaeI	YGGCCR	2 cut(s)	995, 2194
Eam1104I	CTCTTC	3 cut(s)	924, 1416, 1572
EarI	CTCTTC	3 cut(s)	924, 1416, 1572
Eco130I	CCWWGG	6 cut(s)	354, 821, 1061, 1142, 1271, 2357
Eco24I	GRGCYC	1 cut(s)	1843
Eco47I	GGWCC	1 cut(s)	1719
Eco57I	CTGAAG	5 cut(s)	948, 1154, 1397, 1406, 1782
Eco72I	CACGTG	1 cut(s)	887
Eco81I	CCTNAGG	2 cut(s)	153, 2406
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRI	GAATTC	2 cut(s)	76, 366
EcoRII	CCWGG	4 cut(s)	168, 507, 1150, 1329
EcoT14I	CCWWGG	6 cut(s)	354, 821, 1061, 1142, 1271, 2357
EcoT22I	ATGCAT	4 cut(s)	97, 270, 784, 1170
EcoT38I	GRGCYC	1 cut(s)	1843
ErhI	CCWWGG	6 cut(s)	354, 821, 1061, 1142, 1271, 2357
Esp3I	CGTCTC	2 cut(s)	275, 2343
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 2274, 2306
FaqI	GGGAC	2 cut(s)	431, 1469
FauI	CCCGC	1 cut(s)	2232
FauNDI	CATATG	2 cut(s)	1653, 1855
FblI	GTMKAC	1 cut(s)	2319
FokI	GGATG	7 cut(s)	299, 913, 925, 1046, 1134, 1288, 2423
FriOI	GRGCYC	1 cut(s)	1843
FspBI	CTAG	5 cut(s)	414, 423, 522, 828, 1731
FspI	TGCGCA	2 cut(s)	100, 1860
GlaI	GCGC	3 cut(s)	100, 457, 1860
GsuI	CTGGAG	2 cut(s)	1242, 1774
HaeIII	GGCC	8 cut(s)	106, 159, 224, 997, 1334, 1865, 2196, 2252
HapII	CCGG	3 cut(s)	221, 1430, 2215
HgaI	GACGC	1 cut(s)	1127
HhaI	GCGC	3 cut(s)	101, 458, 1861
Hin1I	GRCGYC	1 cut(s)	125
Hin6I	GCGC	3 cut(s)	99, 456, 1859
HinP1I	GCGC	3 cut(s)	99, 456, 1859
HincII	GTYRAC	3 cut(s)	1041, 2140, 2320
HindII	GTYRAC	3 cut(s)	1041, 2140, 2320
HpaII	CCGG	3 cut(s)	221, 1430, 2215
HphI	GGTGA	1 cut(s)	1061
Hpy188I	TCNGA	8 cut(s)	82, 838, 912, 944, 1644, 1945, 2079, 2113
Hpy188III	TCNNGA	9 cut(s)	980, 1607, 1731, 1760, 1791, 2070, 2392, 2405, 2495
Hpy99I	CGWCG	3 cut(s)	127, 456, 2321
HpyAV	CCTTC	4 cut(s)	939, 1136, 1430, 1757
HpyCH4III	ACNGT	8 cut(s)	164, 715, 808, 1119, 1755, 2011, 2126, 2159
HpyCH4IV	ACGT	5 cut(s)	125, 308, 886, 1615, 2379
HpyF3I	CTNAG	9 cut(s)	153, 462, 837, 1208, 1536, 1815, 2112, 2291, 2406
HpySE526I	ACGT	5 cut(s)	125, 308, 886, 1615, 2379
Hsp92I	GRCGYC	1 cut(s)	125
HspAI	GCGC	3 cut(s)	99, 456, 1859
Kzo9I	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
LguI	GCTCTTC	1 cut(s)	1572
LmnI	GCTCC	7 cut(s)	34, 41, 56, 82, 255, 681, 1846
MabI	ACCWGGT	1 cut(s)	168
MaeI	CTAG	5 cut(s)	414, 423, 522, 828, 1731
MaeII	ACGT	5 cut(s)	125, 308, 886, 1615, 2379
MaeIII	GTNAC	4 cut(s)	164, 259, 416, 1821
MalI	GATC	7 cut(s)	242, 528, 978, 984, 1015, 1374, 2296
MbiI	CCGCTC	2 cut(s)	59, 2199
MboI	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
MflI	RGATCY	2 cut(s)	526, 982
MhlI	GDGCHC	2 cut(s)	1843, 2418
MlsI	TGGCCA	1 cut(s)	997
MluCI	AATT	9 cut(s)	76, 366, 388, 1000, 1470, 1556, 1657, 1933, 1939
MluNI	TGGCCA	1 cut(s)	997
MlyI	GAGTC	6 cut(s)	142, 316, 941, 1046, 1654, 2372
MmeI	TCCRAC	2 cut(s)	581, 2259
Mox20I	TGGCCA	1 cut(s)	997
Mph1103I	ATGCAT	4 cut(s)	97, 270, 784, 1170
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	997
MseI	TTAA	4 cut(s)	867, 1199, 1560, 1974
MslI	CAYNNNNRTG	3 cut(s)	273, 885, 2051
Msp20I	TGGCCA	1 cut(s)	997
MspA1I	CMGCKG	3 cut(s)	1456, 1814, 2236
MspI	CCGG	3 cut(s)	221, 1430, 2215
MspR9I	CCNGG	7 cut(s)	170, 221, 509, 1152, 1331, 1431, 2215
MvaI	CCWGG	4 cut(s)	170, 509, 1152, 1331
MvnI	CGCG	1 cut(s)	456
NciI	CCSGG	3 cut(s)	221, 1431, 2215
NcoI	CCATGG	2 cut(s)	354, 2357
NdeI	CATATG	2 cut(s)	1653, 1855
NdeII	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
NlaIV	GGNNCC	3 cut(s)	984, 1720, 1842
NmeAIII	GCCGAG	1 cut(s)	2502
NmuCI	GTSAC	3 cut(s)	164, 259, 416
NsbI	TGCGCA	2 cut(s)	100, 1860
NsiI	ATGCAT	4 cut(s)	97, 270, 784, 1170
NspI	RCATGY	8 cut(s)	95, 99, 272, 751, 1391, 1744, 2050, 2101
OliI	CACNNNNGTG	1 cut(s)	885
PaeI	GCATGC	5 cut(s)	95, 99, 272, 751, 2101
PagI	TCATGA	1 cut(s)	1606
PaqCI	CACCTGC	2 cut(s)	1037, 1492
PciI	ACATGT	1 cut(s)	1387
PciSI	GCTCTTC	1 cut(s)	1572
PcsI	WCGNNNNNNNCGW	2 cut(s)	122, 1135
PdmI	GAANNNNTTC	1 cut(s)	345
PleI	GAGTC	6 cut(s)	141, 316, 940, 1045, 1653, 2371
PmaCI	CACGTG	1 cut(s)	887
PmlI	CACGTG	1 cut(s)	887
PpsI	GAGTC	6 cut(s)	141, 316, 940, 1045, 1653, 2371
Ppu21I	YACGTR	2 cut(s)	887, 1616
PscI	ACATGT	1 cut(s)	1387
PsiI	TTATAA	1 cut(s)	816
Psp1406I	AACGTT	1 cut(s)	2379
Psp6I	CCWGG	4 cut(s)	168, 507, 1150, 1329
PspCI	CACGTG	1 cut(s)	887
PspGI	CCWGG	4 cut(s)	168, 507, 1150, 1329
PspN4I	GGNNCC	3 cut(s)	984, 1720, 1842
PspPI	GGNCC	4 cut(s)	104, 157, 1719, 2251
PstI	CTGCAG	1 cut(s)	1503
PsuI	RGATCY	2 cut(s)	526, 982
PvuII	CAGCTG	3 cut(s)	1456, 1814, 2236
RsaI	GTAC	8 cut(s)	427, 950, 958, 1109, 1328, 1418, 2013, 2161
RsaNI	GTAC	8 cut(s)	426, 949, 957, 1108, 1327, 1417, 2012, 2160
RseI	CAYNNNNRTG	3 cut(s)	273, 885, 2051
SalI	GTCGAC	1 cut(s)	2318
SapI	GCTCTTC	1 cut(s)	1572
SaqAI	TTAA	4 cut(s)	867, 1199, 1560, 1974
Sau3AI	GATC	7 cut(s)	240, 526, 976, 982, 1013, 1372, 2294
Sau96I	GGNCC	4 cut(s)	104, 157, 1719, 2251
SchI	GAGTC	6 cut(s)	142, 316, 941, 1046, 1654, 2372
ScrFI	CCNGG	7 cut(s)	170, 221, 509, 1152, 1331, 1431, 2215
SduI	GDGCHC	2 cut(s)	1843, 2418
SexAI	ACCWGGT	1 cut(s)	168
SfcI	CTRYAG	2 cut(s)	494, 1499
SinI	GGWCC	1 cut(s)	1719
SmiMI	CAYNNNNRTG	3 cut(s)	273, 885, 2051
SmlI	CTYRAG	2 cut(s)	2493, 2531
SmoI	CTYRAG	2 cut(s)	2493, 2531
SpeI	ACTAGT	1 cut(s)	422
SphI	GCATGC	5 cut(s)	95, 99, 272, 751, 2101
Sse9I	AATT	9 cut(s)	76, 366, 388, 1000, 1470, 1556, 1657, 1933, 1939
SsiI	CCGC	7 cut(s)	59, 326, 1044, 1475, 1583, 2197, 2239
SspMI	CTAG	5 cut(s)	414, 423, 522, 828, 1731
StyD4I	CCNGG	7 cut(s)	168, 219, 507, 1150, 1329, 1429, 2213
StyI	CCWWGG	6 cut(s)	354, 821, 1061, 1142, 1271, 2357
TaaI	ACNGT	8 cut(s)	164, 715, 808, 1119, 1755, 2011, 2126, 2159
TaiI	ACGT	5 cut(s)	128, 311, 889, 1618, 2382
TaqI	TCGA	5 cut(s)	136, 565, 703, 1129, 2319
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	9 cut(s)	76, 366, 388, 1000, 1470, 1556, 1657, 1933, 1939
TatI	WGTACW	2 cut(s)	425, 2159
TauI	GCSGC	2 cut(s)	1585, 2199
Tru1I	TTAA	4 cut(s)	867, 1199, 1560, 1974
Tru9I	TTAA	4 cut(s)	867, 1199, 1560, 1974
TscAI	CASTG	6 cut(s)	169, 486, 1122, 1758, 2208, 2485
TseFI	GTSAC	3 cut(s)	164, 259, 416
Tsp45I	GTSAC	3 cut(s)	164, 259, 416
TspDTI	ATGAA	8 cut(s)	17, 303, 678, 1197, 1259, 1670, 2097, 2502
TspGWI	ACGGA	3 cut(s)	299, 447, 1700
TspRI	CASTG	6 cut(s)	169, 486, 1122, 1758, 2208, 2485
VneI	GTGCAC	1 cut(s)	2414
VpaK11BI	GGWCC	1 cut(s)	1719
XapI	RAATTY	4 cut(s)	76, 366, 1000, 1657
XbaI	TCTAGA	1 cut(s)	1730
XceI	RCATGY	8 cut(s)	95, 99, 272, 751, 1391, 1744, 2050, 2101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1005
XmiI	GTMKAC	1 cut(s)	2319
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	5 cut(s)	414, 423, 522, 828, 1731
ZraI	GACGTC	1 cut(s)	126
Zsp2I	ATGCAT	4 cut(s)	97, 270, 784, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.