Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G37020 AT5G37020 AT5G37020 |
| fragaria_vesca | FvH4_1g27650 FvH4_1g27650 FvH4_1g27650 |
| malus_domestica | MD09G1282200.v1.1 MD17G1272200.v1.1 |
| prunus_persica | Prupe.3G011800_v2.0.a1 |
| pyrus_communis | pycom09g19010 pycom17g27100 |
| rosa_chinensis | RchiOBHm_Chr3g0487771 |
| rosa_laevigata | RLG00000022974 |
| rosa_multiflora | Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00394490 |
| rosa_rugosa | Rorug03G0236300 Rorug03G0236400 |
| rosa_samantha | Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200 |
| rosa_wichuraiana | Rw3G025230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 906 |
| AciI | CCGC | 1 cut(s) | 1121 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 959 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| AgsI | TTSAA | 6 cut(s) | 131, 538, 814, 932, 1115, 1140 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 6 cut(s) | 320, 386, 461, 635, 856, 886 |
| AluI | AGCT | 6 cut(s) | 320, 386, 461, 635, 856, 886 |
| Alw21I | GWGCWC | 1 cut(s) | 322 |
| Alw26I | GTCTC | 1 cut(s) | 619 |
| AlwI | GGATC | 1 cut(s) | 503 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 886 |
| ApeKI | GCWGC | 4 cut(s) | 632, 919, 922, 1118 |
| AspLEI | GCGC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 518 |
| BanII | GRGCYC | 1 cut(s) | 322 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 540, 572 |
| BbsI | GAAGAC | 5 cut(s) | 138, 176, 696, 821, 1094 |
| Bbv12I | GWGCWC | 1 cut(s) | 322 |
| BbvI | GCAGC | 4 cut(s) | 644, 931, 934, 1130 |
| BccI | CCATC | 3 cut(s) | 394, 422, 1009 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 621, 655 |
| BclI | TGATCA | 1 cut(s) | 376 |
| BcoDI | GTCTC | 1 cut(s) | 619 |
| BfmI | CTRYAG | 2 cut(s) | 585, 899 |
| BfuAI | ACCTGC | 1 cut(s) | 906 |
| BglII | AGATCT | 1 cut(s) | 807 |
| BisI | GCNGC | 4 cut(s) | 633, 920, 923, 1119 |
| BlsI | GCNGC | 4 cut(s) | 634, 921, 924, 1120 |
| BmiI | GGNNCC | 1 cut(s) | 42 |
| BmrI | ACTGGG | 2 cut(s) | 46, 96 |
| BmsI | GCATC | 3 cut(s) | 273, 770, 899 |
| BmuI | ACTGGG | 2 cut(s) | 46, 96 |
| BpiI | GAAGAC | 5 cut(s) | 138, 176, 696, 821, 1094 |
| BpmI | CTGGAG | 1 cut(s) | 786 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 1 cut(s) | 497 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| Bse1I | ACTGG | 5 cut(s) | 41, 91, 482, 512, 1046 |
| BseDI | CCNNGG | 1 cut(s) | 497 |
| BseGI | GGATG | 1 cut(s) | 784 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| BseNI | ACTGG | 5 cut(s) | 41, 91, 482, 512, 1046 |
| BseRI | GAGGAG | 3 cut(s) | 23, 581, 584 |
| BseXI | GCAGC | 4 cut(s) | 644, 931, 934, 1130 |
| BsgI | GTGCAG | 1 cut(s) | 938 |
| BsiHKAI | GWGCWC | 1 cut(s) | 322 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 211, 503 |
| BsmAI | GTCTC | 1 cut(s) | 619 |
| BsmI | GAATGC | 1 cut(s) | 721 |
| Bsp1286I | GDGCHC | 1 cut(s) | 322 |
| Bsp143I | GATC | 3 cut(s) | 376, 508, 807 |
| BspACI | CCGC | 1 cut(s) | 1121 |
| BspLI | GGNNCC | 1 cut(s) | 42 |
| BspMAI | CTGCAG | 1 cut(s) | 903 |
| BspMI | ACCTGC | 1 cut(s) | 906 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BsrI | ACTGG | 5 cut(s) | 41, 91, 482, 512, 1046 |
| BssECI | CCNNGG | 1 cut(s) | 497 |
| BssMI | GATC | 3 cut(s) | 376, 508, 807 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| BssT1I | CCWWGG | 1 cut(s) | 497 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 2 cut(s) | 408, 888 |
| BstF5I | GGATG | 1 cut(s) | 784 |
| BstHHI | GCGC | 1 cut(s) | 301 |
| BstKTI | GATC | 3 cut(s) | 379, 511, 810 |
| BstMAI | GTCTC | 1 cut(s) | 619 |
| BstMBI | GATC | 3 cut(s) | 376, 508, 807 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| BstSFI | CTRYAG | 2 cut(s) | 585, 899 |
| BstV1I | GCAGC | 4 cut(s) | 644, 931, 934, 1130 |
| BstV2I | GAAGAC | 5 cut(s) | 138, 176, 696, 821, 1094 |
| BstX2I | RGATCY | 1 cut(s) | 807 |
| BstYI | RGATCY | 1 cut(s) | 807 |
| BtsCI | GGATG | 1 cut(s) | 784 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| BveI | ACCTGC | 1 cut(s) | 906 |
| Cac8I | GCNNGC | 2 cut(s) | 408, 888 |
| CaiI | CAGNNNCTG | 1 cut(s) | 886 |
| CfoI | GCGC | 1 cut(s) | 301 |
| CseI | GACGC | 1 cut(s) | 399 |
| Csp6I | GTAC | 1 cut(s) | 958 |
| CviAII | CATG | 4 cut(s) | 94, 694, 718, 1143 |
| CviQI | GTAC | 1 cut(s) | 958 |
| DpnI | GATC | 3 cut(s) | 378, 510, 809 |
| DpnII | GATC | 3 cut(s) | 376, 508, 807 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| EarI | CTCTTC | 4 cut(s) | 54, 63, 153, 543 |
| Ecl136II | GAGCTC | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 497 |
| Eco24I | GRGCYC | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 320 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| EcoICRI | GAGCTC | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 497 |
| EcoT22I | ATGCAT | 1 cut(s) | 723 |
| EcoT38I | GRGCYC | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 497 |
| FaeI | CATG | 4 cut(s) | 97, 697, 721, 1146 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 4 cut(s) | 93, 693, 717, 1142 |
| FbaI | TGATCA | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 4 cut(s) | 633, 920, 923, 1119 |
| FokI | GGATG | 1 cut(s) | 791 |
| FriOI | GRGCYC | 1 cut(s) | 322 |
| Fsp4HI | GCNGC | 4 cut(s) | 633, 920, 923, 1119 |
| GlaI | GCGC | 1 cut(s) | 300 |
| GluI | GCNGC | 4 cut(s) | 633, 920, 923, 1119 |
| GsuI | CTGGAG | 1 cut(s) | 786 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 1 cut(s) | 301 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 4 cut(s) | 97, 697, 721, 1146 |
| Hin6I | GCGC | 1 cut(s) | 299 |
| HinP1I | GCGC | 1 cut(s) | 299 |
| HincII | GTYRAC | 3 cut(s) | 414, 487, 517 |
| HindII | GTYRAC | 3 cut(s) | 414, 487, 517 |
| HinfI | GANTC | 2 cut(s) | 52, 1090 |
| HpaI | GTTAAC | 1 cut(s) | 517 |
| HphI | GGTGA | 2 cut(s) | 152, 518 |
| Hpy166II | GTNNAC | 4 cut(s) | 414, 487, 517, 960 |
| Hpy188I | TCNGA | 4 cut(s) | 317, 324, 381, 399 |
| Hpy188III | TCNNGA | 6 cut(s) | 56, 538, 616, 626, 803, 811 |
| Hpy8I | GTNNAC | 4 cut(s) | 414, 487, 517, 960 |
| HpyAV | CCTTC | 2 cut(s) | 131, 697 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 1 cut(s) | 738 |
| HpyCH4V | TGCA | 4 cut(s) | 286, 721, 901, 919 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| HpySE526I | ACGT | 1 cut(s) | 738 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 4 cut(s) | 97, 697, 721, 1146 |
| HspAI | GCGC | 1 cut(s) | 299 |
| Ksp22I | TGATCA | 1 cut(s) | 376 |
| KspAI | GTTAAC | 1 cut(s) | 517 |
| Kzo9I | GATC | 3 cut(s) | 376, 508, 807 |
| LmnI | GCTCC | 3 cut(s) | 10, 418, 847 |
| Lsp1109I | GCAGC | 4 cut(s) | 644, 931, 934, 1130 |
| LweI | GCATC | 3 cut(s) | 273, 770, 899 |
| MaeII | ACGT | 1 cut(s) | 738 |
| MaeIII | GTNAC | 2 cut(s) | 82, 140 |
| MalI | GATC | 3 cut(s) | 378, 510, 809 |
| MboI | GATC | 3 cut(s) | 376, 508, 807 |
| MflI | RGATCY | 1 cut(s) | 807 |
| MhlI | GDGCHC | 1 cut(s) | 322 |
| MlyI | GAGTC | 2 cut(s) | 61, 1084 |
| MnlI | CCTC | 9 cut(s) | 429, 483, 497, 537, 544, 559, 562, 726, 775 |
| Mph1103I | ATGCAT | 1 cut(s) | 723 |
| MseI | TTAA | 5 cut(s) | 210, 516, 768, 936, 974 |
| MspA1I | CMGCKG | 1 cut(s) | 1121 |
| Mva1269I | GAATGC | 1 cut(s) | 721 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 590, 641, 650 |
| NdeII | GATC | 3 cut(s) | 376, 508, 807 |
| NlaIII | CATG | 4 cut(s) | 97, 697, 721, 1146 |
| NlaIV | GGNNCC | 1 cut(s) | 42 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| NsiI | ATGCAT | 1 cut(s) | 723 |
| PctI | GAATGC | 1 cut(s) | 721 |
| PkrI | GCNGC | 4 cut(s) | 634, 921, 924, 1120 |
| PleI | GAGTC | 2 cut(s) | 60, 1084 |
| PpsI | GAGTC | 2 cut(s) | 60, 1084 |
| Psp124BI | GAGCTC | 1 cut(s) | 322 |
| PspN4I | GGNNCC | 1 cut(s) | 42 |
| PstI | CTGCAG | 1 cut(s) | 903 |
| PstNI | CAGNNNCTG | 1 cut(s) | 886 |
| PsuI | RGATCY | 1 cut(s) | 807 |
| RsaI | GTAC | 1 cut(s) | 959 |
| RsaNI | GTAC | 1 cut(s) | 958 |
| SacI | GAGCTC | 1 cut(s) | 322 |
| SaqAI | TTAA | 5 cut(s) | 210, 516, 768, 936, 974 |
| SatI | GCNGC | 4 cut(s) | 633, 920, 923, 1119 |
| Sau3AI | GATC | 3 cut(s) | 376, 508, 807 |
| SchI | GAGTC | 2 cut(s) | 61, 1084 |
| SduI | GDGCHC | 1 cut(s) | 322 |
| SfaNI | GCATC | 3 cut(s) | 273, 770, 899 |
| SfcI | CTRYAG | 2 cut(s) | 585, 899 |
| SsiI | CCGC | 1 cut(s) | 1121 |
| SstI | GAGCTC | 1 cut(s) | 322 |
| StyI | CCWWGG | 1 cut(s) | 497 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 1 cut(s) | 741 |
| TaqI | TCGA | 2 cut(s) | 617, 627 |
| TatI | WGTACW | 1 cut(s) | 957 |
| Tru1I | TTAA | 5 cut(s) | 210, 516, 768, 936, 974 |
| Tru9I | TTAA | 5 cut(s) | 210, 516, 768, 936, 974 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| TseI | GCWGC | 4 cut(s) | 632, 919, 922, 1118 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 6 cut(s) | 131, 182, 204, 456, 710, 1086 |
| TspGWI | ACGGA | 2 cut(s) | 431, 837 |
| TspRI | CASTG | 1 cut(s) | 129 |
| Zsp2I | ATGCAT | 1 cut(s) | 723 |