Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Reverse (-)

21911791 .. 21912843

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGCTATGCTCATTTGTTTGAATACATTTGTGAACGTTTCAAGTTTTCTGCAACTGATGATATTGAGCTTCATTATTCGCTTCCTGGATGCGCTATTTTTTTTCTTCGCAATGATGATGATTTCAAGATGCTGTTTAGCGGTGCCAAGATTTACAAGTTGGATTGTGTTGATATTATGGTGTTGAAGAATAGTGTAAGTTGCAGCAAAAAAACTTCTGTTTCATTTGAAGATAGCTGCTCTGGTATTGTTGATGAAGATGATTACCTCACTGAGGCATTTAGGACTGAAGTTCAAAAGTCTTACTTGTCAAATGAGTGGGCTAGTTACATTCAATGTGTAGGGCAGAAATTTCGTGGCGGTTCCCCTGAGTTTCGAGACAGGCTCAGAAAGTATGCTATTGAAGTTGGGTTCAGCTTTGTATTTATTAGAAATGACTGGGACAGAATTCATGCAGTTTGTTCCAATTGGGGAACCGAAGGATGTGAGTGGAATGTCCGTGGTTATGTATCCCCTGCAAATGGATGCTTTATTATTGGTGAGTTGGACAATGTCCATTCTTGCAAAGGTGTTCTTCGAAAGCAAAAACATGAGCTTTTGGGATCAAAAATTGTCAAGACATGTATTGAAGAGGACATTAGCTATAACTTATCATTGAAGCCAAGGGAAATTATCAGCAAGTTCAAGTCAGCTTATGGGTTTGATATATCGTACAAGGTTGCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTATGGTTCTGAGGCTGATTCGTTTAACAAGTTAACATGGTATAGGGATGCTGTATTTGAGACTAACCCGGGATCTTCGTTTGTTTTGGAAGTTGATCCATCGAGCAATCGGTTTCAGAGGCTTTTCCTAGCTTATGCAGGCTGTGTTAAAGGCTTTGAATTCTGCCTTCCCGTCTTGTTTGTCGATGGGACTTTTGGGAAGAGTGTCTACAAGGGGCAGATACTTTGTGCAACCGGAAAGAATGGAAATCATGGTATTTTTCTCATGTCTATGATTTTTTATTGGTATTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

350

Amino Acids

40.15

Weight (kDa)

6.96

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	113 - 179	4.4e-10	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	963
AciI	CCGC	2 cut(s)	141, 360
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	3 cut(s)	610, 835, 845
AcsI	RAATTY	3 cut(s)	350, 447, 914
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	274, 521
AflIII	ACRYGT	1 cut(s)	620
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	8 cut(s)	6, 70, 237, 417, 595, 642, 692, 887
AluI	AGCT	8 cut(s)	6, 70, 237, 417, 595, 642, 692, 887
Alw26I	GTCTC	2 cut(s)	372, 809
AlwI	GGATC	3 cut(s)	610, 835, 845
Ama87I	CYCGRG	1 cut(s)	823
ApeKI	GCWGC	2 cut(s)	204, 237
ApoI	RAATTY	3 cut(s)	350, 447, 914
AspLEI	GCGC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	824, 825
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	947, 979
BbvI	GCAGC	2 cut(s)	216, 224
BccI	CCATC	2 cut(s)	862, 935
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	824, 825
BcoDI	GTCTC	2 cut(s)	372, 809
BfaI	CTAG	3 cut(s)	324, 744, 884
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	205, 238
BlsI	GCNGC	2 cut(s)	206, 239
Bme1390I	CCNGG	3 cut(s)	87, 824, 825
BmeT110I	CYCGRG	1 cut(s)	823
BmiI	GGNNCC	3 cut(s)	145, 364, 475
BmrFI	CCNGG	3 cut(s)	87, 824, 825
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	4 cut(s)	80, 120, 515, 793
BmuI	ACTGGG	1 cut(s)	448
BplI	GAGNNNNNCTC	3 cut(s)	27, 369, 401
Bpu14I	TTCGAA	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	824, 825
BsaJI	CCNNGG	3 cut(s)	499, 662, 823
BsaWI	WCCGGW	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 521
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	499, 662, 823
BseGI	GGATG	4 cut(s)	95, 488, 530, 808
BseLI	CCNNNNNNNGG	2 cut(s)	274, 521
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	4 cut(s)	264, 360, 400, 756
BseNI	ACTGG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	216, 224
BshNI	GGYRCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	2 cut(s)	824, 990
BslFI	GGGAC	2 cut(s)	455, 958
BslI	CCNNNNNNNGG	2 cut(s)	274, 521
BsmAI	GTCTC	2 cut(s)	372, 809
BsmFI	GGGAC	2 cut(s)	455, 958
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	602, 827, 850
BspACI	CCGC	2 cut(s)	141, 360
BspCNI	CTCAG	4 cut(s)	265, 361, 399, 757
BspLI	GGNNCC	3 cut(s)	145, 364, 475
BspPI	GGATC	3 cut(s)	610, 835, 845
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	499, 662, 823
BssMI	GATC	3 cut(s)	602, 827, 850
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	624, 950
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	895
BstDEI	CTNAG	4 cut(s)	273, 369, 386, 765
BstDSI	CCRYGG	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	4 cut(s)	95, 488, 530, 808
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	3 cut(s)	605, 830, 853
BstMAI	GTCTC	2 cut(s)	372, 809
BstMBI	GATC	3 cut(s)	602, 827, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	3 cut(s)	85, 822, 823
BstV1I	GCAGC	2 cut(s)	216, 224
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
BsuI	GTATCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	4 cut(s)	95, 488, 530, 808
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	895
CfoI	GCGC	1 cut(s)	95
Cfr9I	CCCGGG	1 cut(s)	823
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	6 cut(s)	452, 590, 621, 792, 1007, 1021
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	4 cut(s)	273, 369, 386, 765
DpnI	GATC	3 cut(s)	604, 829, 852
DpnII	GATC	3 cut(s)	602, 827, 850
Eam1104I	CTCTTC	2 cut(s)	624, 950
EarI	CTCTTC	2 cut(s)	624, 950
Eco130I	CCWWGG	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	823
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoRI	GAATTC	2 cut(s)	447, 914
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	6 cut(s)	455, 593, 624, 795, 1010, 1024
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 558, 590
FaqI	GGGAC	2 cut(s)	455, 958
FatI	CATG	6 cut(s)	451, 589, 620, 791, 1006, 1020
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	2 cut(s)	205, 238
FokI	GGATG	4 cut(s)	102, 495, 537, 815
Fsp4HI	GCNGC	2 cut(s)	205, 238
FspBI	CTAG	3 cut(s)	324, 744, 884
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	205, 238
HapII	CCGG	2 cut(s)	824, 990
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	455, 593, 624, 795, 1010, 1024
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HinfI	GANTC	1 cut(s)	773
HpaI	GTTAAC	1 cut(s)	789
HpaII	CCGG	2 cut(s)	824, 990
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	35, 789, 964
Hpy188I	TCNGA	3 cut(s)	389, 766, 873
Hpy188III	TCNNGA	3 cut(s)	127, 377, 616
Hpy8I	GTNNAC	3 cut(s)	35, 789, 964
HpyAV	CCTTC	3 cut(s)	473, 733, 932
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	53, 204, 455, 518, 564, 893, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	4 cut(s)	273, 369, 386, 765
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	6 cut(s)	455, 593, 624, 795, 1010, 1024
HspAI	GCGC	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	789
Kzo9I	GATC	3 cut(s)	602, 827, 850
Lsp1109I	GCAGC	2 cut(s)	216, 224
LweI	GCATC	4 cut(s)	80, 120, 515, 793
MaeI	CTAG	3 cut(s)	324, 744, 884
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	604, 829, 852
MboI	GATC	3 cut(s)	602, 827, 850
MboII	GAAGA	8 cut(s)	98, 199, 242, 269, 566, 641, 822, 967
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	1 cut(s)	827
MluCI	AATT	6 cut(s)	350, 447, 466, 609, 669, 914
MmeI	TCCRAC	2 cut(s)	141, 525
MnlI	CCTC	5 cut(s)	268, 278, 625, 760, 867
MseI	TTAA	3 cut(s)	780, 788, 903
MslI	CAYNNNNRTG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	824, 990
MspR9I	CCNGG	3 cut(s)	87, 824, 825
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	728
NciI	CCSGG	2 cut(s)	824, 825
NdeII	GATC	3 cut(s)	602, 827, 850
NlaIII	CATG	6 cut(s)	455, 593, 624, 795, 1010, 1024
NlaIV	GGNNCC	3 cut(s)	145, 364, 475
NspI	RCATGY	1 cut(s)	624
NspV	TTCGAA	1 cut(s)	577
PciI	ACATGT	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	773
PflFI	GACNNNGTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	206, 239
PscI	ACATGT	1 cut(s)	620
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	145, 364, 475
PsuI	RGATCY	1 cut(s)	827
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	1025
SaqAI	TTAA	3 cut(s)	780, 788, 903
SatI	GCNGC	2 cut(s)	205, 238
Sau3AI	GATC	3 cut(s)	602, 827, 850
ScrFI	CCNGG	3 cut(s)	87, 824, 825
SfaNI	GCATC	4 cut(s)	80, 120, 515, 793
SfuI	TTCGAA	1 cut(s)	577
SmaI	CCCGGG	1 cut(s)	825
SmiMI	CAYNNNNRTG	1 cut(s)	1025
Sse9I	AATT	6 cut(s)	350, 447, 466, 609, 669, 914
SsiI	CCGC	2 cut(s)	141, 360
SspMI	CTAG	3 cut(s)	324, 744, 884
StyD4I	CCNGG	3 cut(s)	85, 822, 823
StyI	CCWWGG	1 cut(s)	662
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	4 cut(s)	376, 577, 857, 939
TasI	AATT	6 cut(s)	350, 447, 466, 609, 669, 914
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	3 cut(s)	780, 788, 903
Tru9I	TTAA	3 cut(s)	780, 788, 903
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	204, 237
TspDTI	ATGAA	4 cut(s)	62, 213, 270, 440
TspGWI	ACGGA	1 cut(s)	488
TspMI	CCCGGG	1 cut(s)	823
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	3 cut(s)	350, 447, 914
XceI	RCATGY	1 cut(s)	624
XmaI	CCCGGG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	963
XspI	CTAG	3 cut(s)	324, 744, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.