Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040239.1

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Forward (+)

501 .. 1608

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040239.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggttctgtggagggaagggtttcctccatttggggcttcaatttggatttggaacaatctcaatttcgtcgagtatgatgatggtggaatagcaagtaagaaattaatagagaggaaggcgaagcttattgatattgatatgaagctttccacatcagggttcggtcggcaggaccaagaaggaggaggaggaggaggaggaggagcggagaagaagtgcttgaattcggagctatggcatgcatgcgcagggcctctggtgtcgctgccgacgtctgggagtagagtggtttactttcctcagggccacagtgaccaggttgctgctactactaacaaacaagttgatgctcacataccaaactacccggccttgcctccccagttgatctgtcagctccacaatgtcacaatgcatgcagatgtggagacggatgaagtatatgcccagatgacgttgcagcctttgactccgcaagaacaaaaggaaacatttcttcccatggagttgggaattccaagcaagcaaccgacaaattacttttgcaagacactcacggcaagtgacactagtacacacggaggcttctctgtccctcgtcgcgccgctgagaaagtgtttcctccactggtacgttctcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

215

Amino Acids

23.51

Weight (kDa)

6.06

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
Acc16I	TGCGCA	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	209
AccII	CGCG	1 cut(s)	606
AciI	CCGC	3 cut(s)	209, 476, 609
AcsI	RAATTY	2 cut(s)	226, 516
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	577, 636
AfiI	CCNNNNNNNGG	3 cut(s)	32, 159, 278
AgsI	TTSAA	2 cut(s)	42, 226
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	4 cut(s)	127, 148, 235, 400
AluI	AGCT	4 cut(s)	127, 148, 235, 400
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	254, 307, 372
ApeKI	GCWGC	3 cut(s)	268, 326, 463
ApoI	RAATTY	2 cut(s)	226, 516
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	2 cut(s)	21, 495
AspLEI	GCGC	2 cut(s)	251, 608
AspS9I	GGNCC	3 cut(s)	175, 254, 307
AsuC2I	CCSGG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	255, 313, 475
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BisI	GCNGC	4 cut(s)	269, 327, 464, 609
BlsI	GCNGC	4 cut(s)	270, 328, 465, 610
Bme1390I	CCNGG	2 cut(s)	320, 371
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	175, 254, 307
BmrFI	CCNGG	2 cut(s)	320, 371
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 159, 278
Bse1I	ACTGG	2 cut(s)	385, 636
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	32, 159, 278
BseMII	CTCAG	2 cut(s)	317, 603
BseNI	ACTGG	2 cut(s)	385, 636
BseRI	GAGGAG	7 cut(s)	201, 204, 207, 210, 213, 216, 219
BseXI	GCAGC	3 cut(s)	255, 313, 475
Bsh1236I	CGCG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	256, 309, 374
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	32, 159, 278
BsmAI	GTCTC	1 cut(s)	425
BsmBI	CGTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	3 cut(s)	256, 309, 374
Bsp143I	GATC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	3 cut(s)	209, 476, 609
BspANI	GGCC	3 cut(s)	256, 309, 374
BspCNI	CTCAG	2 cut(s)	316, 604
BspFNI	CGCG	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	385, 636
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	243, 247, 420, 527
BstDEI	CTNAG	2 cut(s)	303, 612
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	2 cut(s)	251, 608
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	390
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	3 cut(s)	245, 249, 422
BstSCI	CCNGG	2 cut(s)	318, 369
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	3 cut(s)	255, 313, 475
BstXI	CCANNNNNNTGG	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	256, 309, 374
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	319, 629
Cac8I	GCNNGC	4 cut(s)	243, 247, 420, 527
CfoI	GCGC	2 cut(s)	251, 608
Cfr13I	GGNCC	3 cut(s)	175, 254, 307
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	576, 635
CviAII	CATG	4 cut(s)	242, 246, 419, 505
CviQI	GTAC	2 cut(s)	576, 635
DdeI	CTNAG	2 cut(s)	303, 612
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	2 cut(s)	226, 516
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	2 cut(s)	247, 420
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	4 cut(s)	245, 249, 422, 508
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	4 cut(s)	241, 245, 418, 504
Fnu4HI	GCNGC	4 cut(s)	269, 327, 464, 609
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	269, 327, 464, 609
FspBI	CTAG	1 cut(s)	573
FspI	TGCGCA	1 cut(s)	250
GlaI	GCGC	2 cut(s)	250, 607
GluI	GCNGC	4 cut(s)	269, 327, 464, 609
HaeIII	GGCC	3 cut(s)	256, 309, 374
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	2 cut(s)	251, 608
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	245, 249, 422, 508
Hin6I	GCGC	2 cut(s)	249, 606
HinP1I	GCGC	2 cut(s)	249, 606
HindIII	AAGCTT	2 cut(s)	125, 146
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	295, 578
Hpy188I	TCNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	295, 578
Hpy99I	CGWCG	3 cut(s)	74, 277, 606
HpyAV	CCTTC	3 cut(s)	11, 112, 176
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	3 cut(s)	275, 458, 637
HpyCH4V	TGCA	5 cut(s)	245, 418, 422, 463, 549
HpyF3I	CTNAG	2 cut(s)	303, 612
HpySE526I	ACGT	3 cut(s)	275, 458, 637
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	245, 249, 422, 508
HspAI	GCGC	2 cut(s)	249, 606
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	206, 232, 405
Lsp1109I	GCAGC	3 cut(s)	255, 313, 475
LweI	GCATC	1 cut(s)	340
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	3 cut(s)	275, 458, 637
MaeIII	GTNAC	3 cut(s)	314, 409, 566
MalI	GATC	1 cut(s)	392
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	1 cut(s)	390
MboII	GAAGA	2 cut(s)	226, 491
MluCI	AATT	6 cut(s)	42, 64, 104, 226, 516, 538
MlyI	GAGTC	1 cut(s)	466
Mph1103I	ATGCAT	2 cut(s)	247, 420
MroXI	GAANNNNTTC	2 cut(s)	21, 495
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	320, 371
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	606
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	4 cut(s)	245, 249, 422, 508
NmuCI	GTSAC	3 cut(s)	314, 409, 566
NsbI	TGCGCA	1 cut(s)	250
NsiI	ATGCAT	2 cut(s)	247, 420
NspI	RCATGY	3 cut(s)	245, 249, 422
PaeI	GCATGC	3 cut(s)	245, 249, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	21, 495
PkrI	GCNGC	4 cut(s)	270, 328, 465, 610
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	175, 254, 307
RsaI	GTAC	2 cut(s)	577, 636
RsaNI	GTAC	2 cut(s)	576, 635
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	269, 327, 464, 609
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	3 cut(s)	175, 254, 307
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	320, 371
SetI	ASST	8 cut(s)	129, 150, 237, 278, 324, 402, 461, 640
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	3 cut(s)	245, 249, 422
Sse9I	AATT	6 cut(s)	42, 64, 104, 226, 516, 538
SsiI	CCGC	3 cut(s)	209, 476, 609
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	318, 369
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	3 cut(s)	278, 461, 640
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	6 cut(s)	42, 64, 104, 226, 516, 538
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	1 cut(s)	611
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	2 cut(s)	319, 636
TseFI	GTSAC	3 cut(s)	314, 409, 566
TseI	GCWGC	3 cut(s)	268, 326, 463
Tsp45I	GTSAC	3 cut(s)	314, 409, 566
TspDTI	ATGAA	2 cut(s)	158, 453
TspGWI	ACGGA	2 cut(s)	449, 597
TspRI	CASTG	2 cut(s)	319, 636
VpaK11BI	GGWCC	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	226, 516
XceI	RCATGY	3 cut(s)	245, 249, 422
XmnI	GAANNNNTTC	2 cut(s)	21, 495
XspI	CTAG	1 cut(s)	573
ZraI	GACGTC	1 cut(s)	276
Zsp2I	ATGCAT	2 cut(s)	247, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.