Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Reverse (-)

33322105 .. 33326562

Gene Structure 4458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCCATCATCTGTTCTGTCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCCGCCCATGCGTCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGAAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACCGCAGGTGAGAGGCAGCCAAGGGTTTCGTTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAGCGTCCTTGGCATCCTGGGGCATCATCAATGCATGATAACAGAGATGAAGCAGCTAATAGCTTAATGTGGCTAAGGGGTGGAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCTTGGATGCAGCAGAGATTGGATTCAACATTTATGGGAAATGACCCCAGTCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATATAGGAAGTGGTGATCAGCTACGACAACATGTAATGCACTTCCAGCAGCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGCACAACCACAAGTTTCAATGGAGAATCTGCCTCAGCAACTTCTACCACCACAATTTAACAATCAAACAGAGGAAGAGCCGCAGCAACAGCACAACACCTATCATGATGCACGTAAGGTTCAAAGAGAACAACTCCATCAGAGTCAGCAAATGAATTTGCCATCTCCATCATTTTCCAAAACGGACTTTGCTGATTCAAGCACAAAGTTGTCAGGGTCTACTACCTCTAGACAGAACACGCTTGGTTCACTGTGTCCTGAAGGGAATAATAATCTTTTGAACATCTCCAGAGCTGGTCATTCTTTGCCAGCTGAGCAGTTACCTCAACAATCCTGGGCTCCAAAGTTTGCATATGCGCAGGCCAATGACTTTGCTAACCCATGTCATTCACACCTTTTGATGAGAAAGACAATGCAGTTGAGCAAGAGAACTGTAATTCAGATTCCCAGAATCCTACTCTTTTTGGTGTTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

420

Amino Acids

47.51

Weight (kDa)

8.75

Isoelectric Point (pI)

72.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD_AD	PF25313	18 - 125	3.1e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	42 - 125	2.7e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AarI	CACCTGC	1 cut(s)	320
AasI	GACNNNNNNGTC	2 cut(s)	214, 420
Acc16I	TGCGCA	1 cut(s)	1143
Acc36I	ACCTGC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	1004
AciI	CCGC	4 cut(s)	57, 327, 758, 866
AclWI	GGATC	2 cut(s)	260, 273
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	283, 940
AcuI	CTGAAG	5 cut(s)	231, 437, 680, 689, 1065
AcvI	CACGTG	1 cut(s)	170
AfaI	GTAC	5 cut(s)	233, 241, 392, 611, 701
AflIII	ACRYGT	3 cut(s)	167, 169, 670
AgsI	TTSAA	7 cut(s)	72, 521, 579, 804, 908, 984, 1066
AjnI	CCWGG	3 cut(s)	433, 612, 1118
AleI	CACNNNNGTG	1 cut(s)	168
AluBI	AGCT	8 cut(s)	81, 473, 480, 539, 661, 739, 1079, 1097
AluI	AGCT	8 cut(s)	81, 473, 480, 539, 661, 739, 1079, 1097
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	260, 273
AoxI	GGCC	3 cut(s)	278, 615, 1146
ApoI	RAATTY	2 cut(s)	283, 940
AspLEI	GCGC	1 cut(s)	1144
AsuC2I	CCSGG	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	344, 665
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BalI	TGGCCA	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	1126
BbrPI	CACGTG	1 cut(s)	170
BbsI	GAAGAC	2 cut(s)	60, 509
BbvCI	CCTCAGC	1 cut(s)	819
BccI	CCATC	6 cut(s)	13, 124, 403, 930, 955, 961
BciT130I	CCWGG	3 cut(s)	435, 614, 1120
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	714
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	111, 1014
BfmI	CTRYAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	1098
Bme1390I	CCNGG	4 cut(s)	435, 614, 714, 1120
BmiI	GGNNCC	2 cut(s)	267, 1125
BmrFI	CCNGG	4 cut(s)	435, 614, 714, 1120
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	6 cut(s)	174, 186, 439, 449, 549, 883
BmuI	ACTGGG	1 cut(s)	594
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	60, 509
BplI	GAGNNNNNCTC	2 cut(s)	903, 935
BpmI	CTGGAG	2 cut(s)	525, 1057
Bpu10I	CCTNAGC	2 cut(s)	491, 819
Bpu1102I	GCTNAGC	1 cut(s)	1098
BpuMI	CCSGG	1 cut(s)	714
BsaAI	YACGTR	2 cut(s)	170, 899
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	6 cut(s)	104, 344, 425, 434, 554, 1119
Bse1I	ACTGG	3 cut(s)	253, 508, 600
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	435, 614, 1120
BseDI	CCNNGG	6 cut(s)	104, 344, 425, 434, 554, 1119
BseGI	GGATG	5 cut(s)	189, 201, 322, 430, 564
BseJI	GATNNNNATC	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	111, 833, 1089
BseNI	ACTGG	3 cut(s)	253, 508, 600
BshFI	GGCC	3 cut(s)	280, 617, 1148
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	752
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	3 cut(s)	280, 617, 1148
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp143I	GATC	4 cut(s)	259, 265, 296, 655
Bsp1720I	GCTNAGC	1 cut(s)	1098
BspACI	CCGC	4 cut(s)	57, 327, 758, 866
BspANI	GGCC	3 cut(s)	280, 617, 1148
BspCNI	CTCAG	3 cut(s)	112, 832, 1090
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	267, 1125
BspMAI	CTGCAG	1 cut(s)	786
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	260, 273
BspQI	GCTCTTC	1 cut(s)	855
BsrI	ACTGG	3 cut(s)	253, 508, 600
BssECI	CCNNGG	6 cut(s)	104, 344, 425, 434, 554, 1119
BssMI	GATC	4 cut(s)	259, 265, 296, 655
BssT1I	CCWWGG	4 cut(s)	104, 344, 425, 554
Bst2UI	CCWGG	3 cut(s)	435, 614, 1120
Bst4CI	ACNGT	4 cut(s)	91, 402, 1038, 1219
Bst6I	CTCTTC	3 cut(s)	207, 699, 855
BstBAI	YACGTR	2 cut(s)	170, 899
BstC8I	GCNNGC	4 cut(s)	32, 786, 1095, 1146
BstDEI	CTNAG	4 cut(s)	120, 491, 819, 1098
BstF5I	GGATG	5 cut(s)	189, 201, 322, 430, 564
BstHHI	GCGC	1 cut(s)	1144
BstKTI	GATC	4 cut(s)	262, 268, 299, 658
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	259, 265, 296, 655
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 62, 427, 623, 685, 745, 874, 1099
BstNI	CCWGG	3 cut(s)	435, 614, 1120
BstNSI	RCATGY	2 cut(s)	34, 674
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	4 cut(s)	433, 612, 712, 1118
BstSFI	CTRYAG	1 cut(s)	782
BstV2I	GAAGAC	2 cut(s)	60, 509
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	280, 617, 1148
BtsCI	GGATG	5 cut(s)	189, 201, 322, 430, 564
BtsIMutI	CAGTG	2 cut(s)	398, 1034
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	4 cut(s)	32, 786, 1095, 1146
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	1 cut(s)	1144
CseI	GACGC	2 cut(s)	54, 410
Csp6I	GTAC	5 cut(s)	232, 240, 391, 610, 700
CviQI	GTAC	5 cut(s)	232, 240, 391, 610, 700
DdeI	CTNAG	4 cut(s)	120, 491, 819, 1098
DpnI	GATC	4 cut(s)	261, 267, 298, 657
DpnII	GATC	4 cut(s)	259, 265, 296, 655
DrdI	GACNNNNNNGTC	2 cut(s)	214, 420
DseDI	GACNNNNNNGTC	2 cut(s)	214, 420
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	3 cut(s)	207, 699, 855
EarI	CTCTTC	3 cut(s)	207, 699, 855
Eco130I	CCWWGG	4 cut(s)	104, 344, 425, 554
Eco24I	GRGCYC	1 cut(s)	1126
Eco57I	CTGAAG	5 cut(s)	231, 437, 680, 689, 1065
Eco72I	CACGTG	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	433, 612, 1118
EcoT14I	CCWWGG	4 cut(s)	104, 344, 425, 554
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	1126
ErhI	CCWWGG	4 cut(s)	104, 344, 425, 554
FaqI	GGGAC	1 cut(s)	752
FauNDI	CATATG	1 cut(s)	1138
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	1004
FokI	GGATG	5 cut(s)	196, 208, 329, 417, 571
FriOI	GRGCYC	1 cut(s)	1126
FspBI	CTAG	2 cut(s)	111, 1014
FspI	TGCGCA	1 cut(s)	1143
GlaI	GCGC	1 cut(s)	1143
GsuI	CTGGAG	2 cut(s)	525, 1057
HaeIII	GGCC	3 cut(s)	280, 617, 1148
HapII	CCGG	1 cut(s)	713
HgaI	GACGC	2 cut(s)	54, 410
HhaI	GCGC	1 cut(s)	1144
Hin6I	GCGC	1 cut(s)	1142
HinP1I	GCGC	1 cut(s)	1142
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	8 cut(s)	215, 320, 575, 811, 928, 980, 1228, 1236
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	344, 665
Hpy166II	GTNNAC	4 cut(s)	324, 635, 1005, 1034
Hpy188I	TCNGA	5 cut(s)	121, 195, 227, 927, 1227
Hpy188III	TCNNGA	5 cut(s)	263, 890, 1014, 1043, 1074
Hpy8I	GTNNAC	4 cut(s)	324, 635, 1005, 1034
HpyAV	CCTTC	4 cut(s)	222, 419, 713, 1040
HpyCH4III	ACNGT	4 cut(s)	91, 402, 1038, 1219
HpyCH4IV	ACGT	2 cut(s)	169, 898
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 62, 427, 623, 685, 745, 874, 1099
HpyF3I	CTNAG	4 cut(s)	120, 491, 819, 1098
HpySE526I	ACGT	2 cut(s)	169, 898
HspAI	GCGC	1 cut(s)	1142
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	259, 265, 296, 655
LguI	GCTCTTC	1 cut(s)	855
LmnI	GCTCC	1 cut(s)	1129
LweI	GCATC	6 cut(s)	174, 186, 439, 449, 549, 883
MaeI	CTAG	2 cut(s)	111, 1014
MaeII	ACGT	2 cut(s)	169, 898
MaeIII	GTNAC	1 cut(s)	1104
MalI	GATC	4 cut(s)	261, 267, 298, 657
MboI	GATC	4 cut(s)	259, 265, 296, 655
MboII	GAAGA	5 cut(s)	60, 224, 509, 686, 872
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	1126
MlsI	TGGCCA	1 cut(s)	280
MluCI	AATT	5 cut(s)	283, 753, 839, 940, 1221
MluNI	TGGCCA	1 cut(s)	280
MlyI	GAGTC	3 cut(s)	224, 329, 937
MnlI	CCTC	8 cut(s)	330, 702, 738, 780, 828, 850, 1021, 1119
Mox20I	TGGCCA	1 cut(s)	280
Mph1103I	ATGCAT	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	280
MseI	TTAA	4 cut(s)	150, 482, 843, 1256
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	739, 1097
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	4 cut(s)	435, 614, 714, 1120
MvaI	CCWGG	3 cut(s)	435, 614, 1120
MwoI	GCNNNNNNNGC	8 cut(s)	56, 62, 427, 623, 685, 745, 874, 1099
NciI	CCSGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	4 cut(s)	259, 265, 296, 655
NlaIV	GGNNCC	2 cut(s)	267, 1125
NsbI	TGCGCA	1 cut(s)	1143
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	2 cut(s)	34, 674
OliI	CACNNNNGTG	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	889
PaqCI	CACCTGC	1 cut(s)	320
PciI	ACATGT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PfeI	GAWTC	5 cut(s)	575, 811, 980, 1228, 1236
PleI	GAGTC	3 cut(s)	223, 328, 936
PmaCI	CACGTG	1 cut(s)	170
PmlI	CACGTG	1 cut(s)	170
PpsI	GAGTC	3 cut(s)	223, 328, 936
Ppu21I	YACGTR	2 cut(s)	170, 899
PscI	ACATGT	1 cut(s)	670
PshAI	GACNNNNGTC	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	3 cut(s)	433, 612, 1118
PspCI	CACGTG	1 cut(s)	170
PspGI	CCWGG	3 cut(s)	433, 612, 1118
PspN4I	GGNNCC	2 cut(s)	267, 1125
PstI	CTGCAG	1 cut(s)	786
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	739, 1097
RsaI	GTAC	5 cut(s)	233, 241, 392, 611, 701
RsaNI	GTAC	5 cut(s)	232, 240, 391, 610, 700
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	4 cut(s)	150, 482, 843, 1256
Sau3AI	GATC	4 cut(s)	259, 265, 296, 655
SchI	GAGTC	3 cut(s)	224, 329, 937
ScrFI	CCNGG	4 cut(s)	435, 614, 714, 1120
SduI	GDGCHC	1 cut(s)	1126
SfaNI	GCATC	6 cut(s)	174, 186, 439, 449, 549, 883
SfcI	CTRYAG	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	5 cut(s)	283, 753, 839, 940, 1221
SsiI	CCGC	4 cut(s)	57, 327, 758, 866
SspMI	CTAG	2 cut(s)	111, 1014
StyD4I	CCNGG	4 cut(s)	433, 612, 712, 1118
StyI	CCWWGG	4 cut(s)	104, 344, 425, 554
TaaI	ACNGT	4 cut(s)	91, 402, 1038, 1219
TaiI	ACGT	2 cut(s)	172, 901
TaqI	TCGA	1 cut(s)	412
TasI	AATT	5 cut(s)	283, 753, 839, 940, 1221
TauI	GCSGC	2 cut(s)	59, 868
TfiI	GAWTC	5 cut(s)	575, 811, 980, 1228, 1236
Tru1I	TTAA	4 cut(s)	150, 482, 843, 1256
Tru9I	TTAA	4 cut(s)	150, 482, 843, 1256
TscAI	CASTG	2 cut(s)	405, 1041
TspDTI	ATGAA	3 cut(s)	480, 542, 953
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	2 cut(s)	405, 1041
XapI	RAATTY	2 cut(s)	283, 940
XbaI	TCTAGA	1 cut(s)	1013
XceI	RCATGY	2 cut(s)	34, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	1004
XspI	CTAG	2 cut(s)	111, 1014
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.