Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007603

Physical Location & Seq

Genomic Coordinates Reverse (-)

34217613 .. 34229003

Gene Structure 11391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGAAGCTTTCCACATCAGGGTTCGGTCGGCAGGACCAAGAAGGAGGAGGAGGAGGAGGAGGAGCGGAGAAGAAGTGCTTGAATTCGGAGCTATGGCATGCATGCGCAGGACCTCTGGTGTCGCTGCCGACGTCTGGGAGTCGAGTGGTTTACTTTCCTCAGGGCCACAGTGACCAGGTTGCTGCTACTACTAACAAACAAGTTGATGCTCACATACCAAACTACCCGGCCTTGCCTCCCCAGTTGATCTGTCAGCTCCACAATGTCACAATGCATGCAGATGTGGAGACGGATGAAGTATATGCCCAGATGACGTTGCAGCCTTTGACTCCGCAAGAACAAAAGGAAACATTTCTTCCCATGGAGTTGGGAATTCCAAGCAAGCAACCGACAAATTACTTTTGCAAGACACTCACGGCGAGTGACACTAGTACACACGGAGGCTTCTCTGTCCCTCGTCGCGCCGCTGAGAAAGTGTTTCCTCCACTGGATTTCTCGCTACAGCCACCAGCCCAGGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTTCGAGGACAGCCAAAACGGCATCTTCTTACGACAGGTTGGAGTGTGTTTGTTAGTGCCAAAAGGCTTGTTGCAGGAGATTCTGTTCTTTTTATTTGGAATGAAAAGAATCAGCTCCTTTTGGGAATTCGCCGTGCAACTCGACCACAAACTGTGATGCCATCATCTGTTCTGTCAAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCCGCCCATGCGTCTTCAACTAATAGCTGTTTTACTGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCCCTATCAAAATACATTAAAGCAGTATTTCACACACGTGTTTCAGTTGGGATGCGATTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCAGAAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGGTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACCGCAGGTGAGAGGCAGCCAAGGGTTTCGTTGTGGGAGATTGAGCCTTTGACCACTTTCCCCATGTACCCATCACTGTTTCCCCTTCGACTGAAGCGTCCTTGGCATCCTGGGGCATCATCAATGCATGATAACAGAGATGAAGCAGCTAATAGCTTAATGTGGCTAAGGGGTGGAACTGGAGAGCAAGGTCTTCAATCCATGAACTTCCAAGCTGTTGGTATGTTTCCTTGGATGCAGCAGAGATTGGATTCAACATTTATGGGAAATGACCCCAGTCAGCAGTACCAGGCCATGTTGGCTGCTGGTTTACAAAATATAGGAAGTGGTGATCAGCTACGACAACATGTAATGCACTTCCAGCAGCCTCTTCAGTACCTTCAGCAGCCGGGTAGCCACAATCCTCTGTTGCAGCTGCAACAGCAAGTAATTCCGCAATCAGTCCCTCATAATATGCTGCAGGCGCAACCACAAGTTTCAATGGAGAATCTGCCTCAGCAACTTCTACCACCACAATTTAACAATCAAACAGAGGAAGAGCCGCAGCAACAGCACAACACCTATCATGATGCACGTAAGGTTCAAAGAGAACAACTCCATCAGAGTCAGCAAATGAATTTGCCATCTCCATCATTTTCCAAAACGGACTTTGCTGATTCAAGCACAAAGTTGTCAGGGTCTACTACCTCTAGACAGAACACGCTTGGTTCACTGTGTCCTGAAGGGAATAATAATCTTTTGAACATCTCCAGAGCTGGTCATTCTTTGCCAGCTGAGCAGTTACCTCAACAATCCTGGGCTCCAAAGTTTGCATATGCGCAGGCCAATGACTTTGCTAACCCATTGTCATTCACACCTTTTGATGAGAAAGACAATGCAGTTGAGCAAGAGAACTGTAATTCAGATTCCCAGAATCCTACTCTTTTTGGTGTTAATATAGAATCATCTGGGCTTGTATTCCCCACCACAGTGCCGAACTTTGCCACTTCTTCAAATGATGCTGACATGCCAATGCCTTTAGGGGATTCTGGATTTCAGAGTTCTCTGTATGGTTGCATGCAAGGTTCATCTGAGTTGTTGCACGGTGCAGGTCAAGTTGACCCACCAACCCCAAACTGTACATTTGTCAAGGTCTGCACTGAAAAGGATTGGATATTGTTGTCTTTTACTCTTTCTCTCTTTAAATTGTTGGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

748

Amino Acids

83.25

Weight (kDa)

6.18

Isoelectric Point (pI)

66.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	134 - 235	5.2e-22	B3 DNA binding domain
BRWD_AD	PF25313	258 - 366	7.4e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	283 - 366	6.4e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37020 AT5G37020 AT5G37020
fragaria_vesca	FvH4_1g27650 FvH4_1g27650 FvH4_1g27650
malus_domestica	MD09G1282200.v1.1 MD17G1272200.v1.1
prunus_persica	Prupe.3G011800_v2.0.a1
pyrus_communis	pycom09g19010 pycom17g27100
rosa_chinensis	RchiOBHm_Chr3g0487771
rosa_laevigata	RLG00000022974
rosa_multiflora	Rmu_sc0009101.1_g000014 Rmu_sc0040239.1_g000002 Rmu_sc0040567.1_g000004
rosa_roxburghii	Rroxscaffold_6G00394490
rosa_rugosa	Rorug03G0236300 Rorug03G0236400
rosa_samantha	Rh3AG284500 Rh3BG321300 Rh3CG319700 Rh3DG318200
rosa_wichuraiana	Rw3G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AarI	CACCTGC	1 cut(s)	1043
AasI	GACNNNNNNGTC	2 cut(s)	937, 1143
AatII	GACGTC	1 cut(s)	134
Acc16I	TGCGCA	2 cut(s)	106, 1866
Acc36I	ACCTGC	2 cut(s)	1043, 2126
AccBSI	CCGCTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	1727
AccII	CGCG	1 cut(s)	462
AciI	CCGC	7 cut(s)	65, 332, 465, 780, 1050, 1481, 1589
AclWI	GGATC	3 cut(s)	540, 983, 996
AcoI	YGGCCR	1 cut(s)	1001
AcsI	RAATTY	5 cut(s)	82, 372, 693, 1006, 1663
AcuI	CTGAAG	5 cut(s)	954, 1160, 1403, 1412, 1788
AcvI	CACGTG	1 cut(s)	893
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	7 cut(s)	433, 956, 964, 1115, 1334, 1424, 2167
AfiI	CCNNNNNNNGG	2 cut(s)	18, 134
AflIII	ACRYGT	3 cut(s)	890, 892, 1393
AgsI	TTSAA	9 cut(s)	82, 795, 1244, 1302, 1527, 1631, 1707, 1789, 2040
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	5 cut(s)	174, 513, 1156, 1335, 1841
AleI	CACNNNNGTG	2 cut(s)	891, 2015
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
Alw26I	GTCTC	2 cut(s)	281, 923
AlwI	GGATC	3 cut(s)	540, 983, 996
AoxI	GGCC	5 cut(s)	163, 228, 1001, 1338, 1869
ApoI	RAATTY	5 cut(s)	82, 372, 693, 1006, 1663
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	4 cut(s)	107, 464, 1513, 1867
AspS9I	GGNCC	3 cut(s)	34, 110, 163
AsuC2I	CCSGG	2 cut(s)	227, 1437
AsuHPI	GGTGA	2 cut(s)	1067, 1388
AvaII	GGWCC	2 cut(s)	34, 110
AxyI	CCTNAGG	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	946, 979
BalI	TGGCCA	1 cut(s)	1003
BamHI	GGATCC	1 cut(s)	988
BanII	GRGCYC	1 cut(s)	1849
BbrPI	CACGTG	1 cut(s)	893
BbsI	GAAGAC	2 cut(s)	783, 1232
BbvCI	CCTCAGC	1 cut(s)	1542
BccI	CCATC	6 cut(s)	736, 847, 1126, 1653, 1678, 1684
BceAI	ACGGC	3 cut(s)	432, 602, 684
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	5 cut(s)	176, 515, 1158, 1337, 1843
BclI	TGATCA	1 cut(s)	1378
BcnI	CCSGG	2 cut(s)	227, 1437
BcoDI	GTCTC	2 cut(s)	281, 923
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	4 cut(s)	429, 528, 834, 1737
BfmI	CTRYAG	2 cut(s)	500, 1505
BfuAI	ACCTGC	2 cut(s)	1043, 2126
BglI	GCCNNNNNGGC	2 cut(s)	586, 1346
BlpI	GCTNAGC	1 cut(s)	1821
Bme1390I	CCNGG	7 cut(s)	176, 227, 515, 1158, 1337, 1437, 1843
Bme18I	GGWCC	2 cut(s)	34, 110
BmgT120I	GGNCC	3 cut(s)	34, 110, 163
BmiI	GGNNCC	2 cut(s)	990, 1848
BmrFI	CCNGG	7 cut(s)	176, 227, 515, 1158, 1337, 1437, 1843
BmrI	ACTGGG	2 cut(s)	235, 1317
BmuI	ACTGGG	2 cut(s)	235, 1317
BoxI	GACNNNNGTC	1 cut(s)	1323
BpiI	GAAGAC	2 cut(s)	783, 1232
BplI	GAGNNNNNCTC	2 cut(s)	1626, 1658
BpmI	CTGGAG	2 cut(s)	1248, 1780
Bpu10I	CCTNAGC	2 cut(s)	1214, 1542
Bpu1102I	GCTNAGC	1 cut(s)	1821
BpuMI	CCSGG	2 cut(s)	227, 1437
BsaAI	YACGTR	2 cut(s)	893, 1622
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	8 cut(s)	360, 513, 827, 1067, 1148, 1157, 1277, 1842
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 134
Bse1I	ACTGG	5 cut(s)	241, 492, 976, 1231, 1323
Bse21I	CCTNAGG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	5 cut(s)	176, 515, 1158, 1337, 1843
BseDI	CCNNGG	8 cut(s)	360, 513, 827, 1067, 1148, 1157, 1277, 1842
BseGI	GGATG	6 cut(s)	298, 912, 924, 1045, 1153, 1287
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	2 cut(s)	18, 134
BseMII	CTCAG	6 cut(s)	173, 459, 834, 1556, 1812, 2109
BseNI	ACTGG	5 cut(s)	241, 492, 976, 1231, 1323
BseRI	GAGGAG	6 cut(s)	60, 63, 66, 69, 72, 75
BsgI	GTGCAG	2 cut(s)	2154, 2167
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	5 cut(s)	165, 230, 1003, 1340, 1871
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	227, 1436
BslFI	GGGAC	2 cut(s)	437, 1475
BslI	CCNNNNNNNGG	2 cut(s)	18, 134
BsmAI	GTCTC	2 cut(s)	281, 923
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	437, 1475
BsnI	GGCC	5 cut(s)	165, 230, 1003, 1340, 1871
Bsp1286I	GDGCHC	1 cut(s)	1849
Bsp1407I	TGTACA	1 cut(s)	2165
Bsp143I	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
Bsp1720I	GCTNAGC	1 cut(s)	1821
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	7 cut(s)	65, 332, 465, 780, 1050, 1481, 1589
BspANI	GGCC	5 cut(s)	165, 230, 1003, 1340, 1871
BspCNI	CTCAG	6 cut(s)	172, 460, 835, 1555, 1813, 2110
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	1612
BspLI	GGNNCC	2 cut(s)	990, 1848
BspMAI	CTGCAG	1 cut(s)	1509
BspMI	ACCTGC	2 cut(s)	1043, 2126
BspPI	GGATC	3 cut(s)	540, 983, 996
BspQI	GCTCTTC	1 cut(s)	1578
BsrBI	CCGCTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	2165
BsrI	ACTGG	5 cut(s)	241, 492, 976, 1231, 1323
BssECI	CCNNGG	8 cut(s)	360, 513, 827, 1067, 1148, 1157, 1277, 1842
BssMI	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	5 cut(s)	360, 827, 1067, 1148, 1277
Bst2UI	CCWGG	5 cut(s)	176, 515, 1158, 1337, 1843
Bst4CI	ACNGT	9 cut(s)	170, 721, 814, 1125, 1761, 1943, 2017, 2132, 2165
Bst6I	CTCTTC	3 cut(s)	930, 1422, 1578
BstACI	GRCGYC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	2165
BstBAI	YACGTR	2 cut(s)	893, 1622
BstC8I	GCNNGC	9 cut(s)	99, 103, 276, 383, 755, 1509, 1818, 1869, 2105
BstDEI	CTNAG	7 cut(s)	159, 468, 843, 1214, 1542, 1821, 2118
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	6 cut(s)	298, 912, 924, 1045, 1153, 1287
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	4 cut(s)	107, 464, 1513, 1867
BstKTI	GATC	6 cut(s)	249, 535, 985, 991, 1022, 1381
BstMAI	GTCTC	2 cut(s)	281, 923
BstMBI	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
BstMCI	CGRYCG	1 cut(s)	28
BstNI	CCWGG	5 cut(s)	176, 515, 1158, 1337, 1843
BstNSI	RCATGY	7 cut(s)	101, 105, 278, 757, 1397, 2056, 2107
BstPAI	GACNNNNGTC	1 cut(s)	1323
BstSCI	CCNGG	7 cut(s)	174, 225, 513, 1156, 1335, 1435, 1841
BstSFI	CTRYAG	2 cut(s)	500, 1505
BstUI	CGCG	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	783, 1232
BstX2I	RGATCY	2 cut(s)	532, 988
BstXI	CCANNNNNNTGG	2 cut(s)	367, 1265
BstYI	RGATCY	2 cut(s)	532, 988
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	165, 230, 1003, 1340, 1871
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	6 cut(s)	298, 912, 924, 1045, 1153, 1287
BtsIMutI	CAGTG	6 cut(s)	175, 485, 1121, 1757, 2022, 2184
BveI	ACCTGC	2 cut(s)	1043, 2126
Cac8I	GCNNGC	9 cut(s)	99, 103, 276, 383, 755, 1509, 1818, 1869, 2105
CciI	TCATGA	1 cut(s)	1612
CfoI	GCGC	4 cut(s)	107, 464, 1513, 1867
Cfr13I	GGNCC	3 cut(s)	34, 110, 163
CseI	GACGC	2 cut(s)	777, 1133
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	7 cut(s)	432, 955, 963, 1114, 1333, 1423, 2166
CviQI	GTAC	7 cut(s)	432, 955, 963, 1114, 1333, 1423, 2166
DdeI	CTNAG	7 cut(s)	159, 468, 843, 1214, 1542, 1821, 2118
DpnI	GATC	6 cut(s)	248, 534, 984, 990, 1021, 1380
DpnII	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
DraI	TTTAAA	1 cut(s)	2230
DrdI	GACNNNNNNGTC	2 cut(s)	937, 1143
DseDI	GACNNNNNNGTC	2 cut(s)	937, 1143
EaeI	YGGCCR	1 cut(s)	1001
Eam1104I	CTCTTC	3 cut(s)	930, 1422, 1578
EarI	CTCTTC	3 cut(s)	930, 1422, 1578
Eco130I	CCWWGG	5 cut(s)	360, 827, 1067, 1148, 1277
Eco24I	GRGCYC	1 cut(s)	1849
Eco47I	GGWCC	2 cut(s)	34, 110
Eco57I	CTGAAG	5 cut(s)	954, 1160, 1403, 1412, 1788
Eco72I	CACGTG	1 cut(s)	893
Eco81I	CCTNAGG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	3 cut(s)	82, 372, 693
EcoRII	CCWGG	5 cut(s)	174, 513, 1156, 1335, 1841
EcoT14I	CCWWGG	5 cut(s)	360, 827, 1067, 1148, 1277
EcoT22I	ATGCAT	3 cut(s)	103, 276, 1176
EcoT38I	GRGCYC	1 cut(s)	1849
ErhI	CCWWGG	5 cut(s)	360, 827, 1067, 1148, 1277
Esp3I	CGTCTC	1 cut(s)	281
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	2 cut(s)	437, 1475
FauNDI	CATATG	1 cut(s)	1861
FbaI	TGATCA	1 cut(s)	1378
FblI	GTMKAC	1 cut(s)	1727
FokI	GGATG	6 cut(s)	305, 919, 931, 1052, 1140, 1294
FriOI	GRGCYC	1 cut(s)	1849
FspBI	CTAG	4 cut(s)	429, 528, 834, 1737
FspI	TGCGCA	2 cut(s)	106, 1866
GlaI	GCGC	4 cut(s)	106, 463, 1512, 1866
GsuI	CTGGAG	2 cut(s)	1248, 1780
HaeIII	GGCC	5 cut(s)	165, 230, 1003, 1340, 1871
HapII	CCGG	2 cut(s)	227, 1436
HgaI	GACGC	2 cut(s)	777, 1133
HhaI	GCGC	4 cut(s)	107, 464, 1513, 1867
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	4 cut(s)	105, 462, 1511, 1865
HinP1I	GCGC	4 cut(s)	105, 462, 1511, 1865
HincII	GTYRAC	2 cut(s)	1047, 2146
HindII	GTYRAC	2 cut(s)	1047, 2146
HindIII	AAGCTT	1 cut(s)	5
HpaII	CCGG	2 cut(s)	227, 1436
HphI	GGTGA	2 cut(s)	1067, 1388
Hpy166II	GTNNAC	7 cut(s)	151, 434, 1047, 1358, 1728, 1757, 2146
Hpy188I	TCNGA	8 cut(s)	88, 844, 918, 950, 1650, 1951, 2085, 2119
Hpy188III	TCNNGA	6 cut(s)	986, 1613, 1737, 1766, 1797, 2076
Hpy8I	GTNNAC	7 cut(s)	151, 434, 1047, 1358, 1728, 1757, 2146
Hpy99I	CGWCG	2 cut(s)	133, 462
HpyAV	CCTTC	5 cut(s)	35, 945, 1142, 1436, 1763
HpyCH4III	ACNGT	9 cut(s)	170, 721, 814, 1125, 1761, 1943, 2017, 2132, 2165
HpyCH4IV	ACGT	4 cut(s)	131, 314, 892, 1621
HpyF3I	CTNAG	7 cut(s)	159, 468, 843, 1214, 1542, 1821, 2118
HpySE526I	ACGT	4 cut(s)	131, 314, 892, 1621
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	4 cut(s)	105, 462, 1511, 1865
Ksp22I	TGATCA	1 cut(s)	1378
Kzo9I	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
LguI	GCTCTTC	1 cut(s)	1578
LmnI	GCTCC	5 cut(s)	62, 88, 261, 687, 1852
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	4 cut(s)	429, 528, 834, 1737
MaeII	ACGT	4 cut(s)	131, 314, 892, 1621
MaeIII	GTNAC	4 cut(s)	170, 265, 422, 1827
MalI	GATC	6 cut(s)	248, 534, 984, 990, 1021, 1380
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
MboII	GAAGA	9 cut(s)	82, 347, 584, 783, 947, 1232, 1409, 1595, 2028
MflI	RGATCY	2 cut(s)	532, 988
MhlI	GDGCHC	1 cut(s)	1849
MlsI	TGGCCA	1 cut(s)	1003
MluNI	TGGCCA	1 cut(s)	1003
MlyI	GAGTC	5 cut(s)	148, 322, 947, 1052, 1660
MmeI	TCCRAC	2 cut(s)	587, 2217
Mox20I	TGGCCA	1 cut(s)	1003
Mph1103I	ATGCAT	3 cut(s)	103, 276, 1176
MroXI	GAANNNNTTC	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	1003
MseI	TTAA	5 cut(s)	873, 1205, 1566, 1980, 2229
MslI	CAYNNNNRTG	4 cut(s)	279, 891, 2015, 2057
Msp20I	TGGCCA	1 cut(s)	1003
MspA1I	CMGCKG	3 cut(s)	467, 1462, 1820
MspI	CCGG	2 cut(s)	227, 1436
MspR9I	CCNGG	7 cut(s)	176, 227, 515, 1158, 1337, 1437, 1843
MvaI	CCWGG	5 cut(s)	176, 515, 1158, 1337, 1843
MvnI	CGCG	1 cut(s)	462
NciI	CCSGG	2 cut(s)	227, 1437
NcoI	CCATGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	1861
NdeII	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
NlaIV	GGNNCC	2 cut(s)	990, 1848
NmuCI	GTSAC	3 cut(s)	170, 265, 422
NsbI	TGCGCA	2 cut(s)	106, 1866
NsiI	ATGCAT	3 cut(s)	103, 276, 1176
NspI	RCATGY	7 cut(s)	101, 105, 278, 757, 1397, 2056, 2107
OliI	CACNNNNGTG	2 cut(s)	891, 2015
PaeI	GCATGC	5 cut(s)	101, 105, 278, 757, 2107
PagI	TCATGA	1 cut(s)	1612
PaqCI	CACCTGC	1 cut(s)	1043
PciI	ACATGT	1 cut(s)	1393
PciSI	GCTCTTC	1 cut(s)	1578
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 1141
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	9 cut(s)	647, 676, 1298, 1534, 1703, 1952, 1960, 1988, 2072
PleI	GAGTC	5 cut(s)	147, 322, 946, 1051, 1659
PmaCI	CACGTG	1 cut(s)	893
PmlI	CACGTG	1 cut(s)	893
PpsI	GAGTC	5 cut(s)	147, 322, 946, 1051, 1659
Ppu21I	YACGTR	2 cut(s)	893, 1622
PpuMI	RGGWCCY	1 cut(s)	110
PscI	ACATGT	1 cut(s)	1393
PshAI	GACNNNNGTC	1 cut(s)	1323
PsiI	TTATAA	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	5 cut(s)	174, 513, 1156, 1335, 1841
PspCI	CACGTG	1 cut(s)	893
PspGI	CCWGG	5 cut(s)	174, 513, 1156, 1335, 1841
PspN4I	GGNNCC	2 cut(s)	990, 1848
PspPI	GGNCC	3 cut(s)	34, 110, 163
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	1509
PsuI	RGATCY	2 cut(s)	532, 988
PvuII	CAGCTG	2 cut(s)	1462, 1820
RsaI	GTAC	7 cut(s)	433, 956, 964, 1115, 1334, 1424, 2167
RsaNI	GTAC	7 cut(s)	432, 955, 963, 1114, 1333, 1423, 2166
RseI	CAYNNNNRTG	4 cut(s)	279, 891, 2015, 2057
SapI	GCTCTTC	1 cut(s)	1578
SaqAI	TTAA	5 cut(s)	873, 1205, 1566, 1980, 2229
Sau3AI	GATC	6 cut(s)	246, 532, 982, 988, 1019, 1378
Sau96I	GGNCC	3 cut(s)	34, 110, 163
SchI	GAGTC	5 cut(s)	148, 322, 947, 1052, 1660
ScrFI	CCNGG	7 cut(s)	176, 227, 515, 1158, 1337, 1437, 1843
SduI	GDGCHC	1 cut(s)	1849
SexAI	ACCWGGT	1 cut(s)	174
SfcI	CTRYAG	2 cut(s)	500, 1505
SinI	GGWCC	2 cut(s)	34, 110
SmiMI	CAYNNNNRTG	4 cut(s)	279, 891, 2015, 2057
SpeI	ACTAGT	1 cut(s)	428
SphI	GCATGC	5 cut(s)	101, 105, 278, 757, 2107
SsiI	CCGC	7 cut(s)	65, 332, 465, 780, 1050, 1481, 1589
SspMI	CTAG	4 cut(s)	429, 528, 834, 1737
StyD4I	CCNGG	7 cut(s)	174, 225, 513, 1156, 1335, 1435, 1841
StyI	CCWWGG	5 cut(s)	360, 827, 1067, 1148, 1277
TaaI	ACNGT	9 cut(s)	170, 721, 814, 1125, 1761, 1943, 2017, 2132, 2165
TaiI	ACGT	4 cut(s)	134, 317, 895, 1624
TaqI	TCGA	4 cut(s)	142, 571, 709, 1135
TaqII	GACCGA	1 cut(s)	14
TatI	WGTACW	2 cut(s)	431, 2165
TauI	GCSGC	3 cut(s)	467, 782, 1591
TfiI	GAWTC	9 cut(s)	647, 676, 1298, 1534, 1703, 1952, 1960, 1988, 2072
Tru1I	TTAA	5 cut(s)	873, 1205, 1566, 1980, 2229
Tru9I	TTAA	5 cut(s)	873, 1205, 1566, 1980, 2229
TscAI	CASTG	6 cut(s)	175, 492, 1128, 1764, 2022, 2191
TseFI	GTSAC	3 cut(s)	170, 265, 422
Tsp45I	GTSAC	3 cut(s)	170, 265, 422
TspDTI	ATGAA	7 cut(s)	17, 309, 684, 1203, 1265, 1676, 2103
TspGWI	ACGGA	3 cut(s)	305, 453, 1706
TspRI	CASTG	6 cut(s)	175, 492, 1128, 1764, 2022, 2191
VpaK11BI	GGWCC	2 cut(s)	34, 110
XapI	RAATTY	5 cut(s)	82, 372, 693, 1006, 1663
XbaI	TCTAGA	1 cut(s)	1736
XceI	RCATGY	7 cut(s)	101, 105, 278, 757, 1397, 2056, 2107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1011
XmiI	GTMKAC	1 cut(s)	1727
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	4 cut(s)	429, 528, 834, 1737
ZraI	GACGTC	1 cut(s)	132
Zsp2I	ATGCAT	3 cut(s)	103, 276, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.