Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015527

Physical Location & Seq

Genomic Coordinates Reverse (-)

19705120 .. 19706087

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27954.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTCGAGCTCTTTGTGAGCTTCAAATTGAGCCAATCAACAATTCTTCAATGAGATCAAACAGGCGAAAGAGACGGAGAGAAGAATTAAATATTCAACGGAATGATGGTATTGGTGAAAGATGTTTAGGTAATTTTCCAAGCTCAGAAGAACTTGCAATGCTGGATGGGAAGACTTTCAAAGAAGTTACCAGTAATATTCTCGGCTATCGAGCAAAAGATATTCTAAAACTTGCCAAAGATGTGGAGAGTGGAAAGATTAGACTTGATGAGTTTGAAGGGCTCGAGGACAAAGATGATATGTTTCACAAATTCAGGCAAATAAGAGGTTTTGGTCCCTTTGCATCCGCCAACGCTATGATGTGCGTTGGATATTATCACAAAGTTCCAGTGGACACTGAAACTATAAGACATTTGAAGGAGGTACACGGGAGGACAAATTGCAACAAGAAAACTGTCACAAAAGATGTGGAAGAAATCTATAACAAGTATGCTCCATTCCAGTGCTTGGCATATTGGTCGGAGCTCCTGGACTCGTACGAAACCAAATTTGGGAAGCTGAGTGAATTACCCAACTCTAACTATCATATAATTAGTGGGAGGCTTGAATCTTTTGACATCACGCATAGTGGAATAAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

215

Amino Acids

24.61

Weight (kDa)

7.65

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27954
malus_domestica	MD00G1096100.v1.1
prunus_persica	Prupe.4G287800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496761
rosa_laevigata	RLG00000022458 RLG00000022506
rosa_multiflora	Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388030
rosa_rugosa	Rorug03G0286800
rosa_samantha	Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana	Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AciI	CCGC	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	311, 548
AfaI	GTAC	2 cut(s)	426, 539
AfiI	CCNNNNNNNGG	2 cut(s)	508, 552
AgsI	TTSAA	7 cut(s)	26, 51, 98, 181, 278, 418, 608
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	4 cut(s)	28, 60, 534, 566
AluBI	AGCT	5 cut(s)	11, 22, 144, 526, 559
AluI	AGCT	5 cut(s)	11, 22, 144, 526, 559
Alw21I	GWGCWC	2 cut(s)	13, 528
Alw26I	GTCTC	1 cut(s)	67
Ama87I	CYCGRG	2 cut(s)	6, 284
ApoI	RAATTY	2 cut(s)	311, 548
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	6, 284
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	3 cut(s)	13, 285, 528
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	13, 528
BccI	CCATC	2 cut(s)	101, 161
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	2 cut(s)	6, 284
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 552
Bse1I	ACTGG	3 cut(s)	192, 389, 502
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	172, 344
BseLI	CCNNNNNNNGG	2 cut(s)	508, 552
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	159, 551
BseNI	ACTGG	3 cut(s)	192, 389, 502
BsiHKAI	GWGCWC	2 cut(s)	13, 528
BsiHKCI	CYCGRG	2 cut(s)	6, 284
BsiWI	CGTACG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	508, 552
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	321
BsoBI	CYCGRG	2 cut(s)	6, 284
Bsp1286I	GDGCHC	3 cut(s)	13, 285, 528
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	158, 552
BspLI	GGNNCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	192, 389, 502
BssMI	GATC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	145, 560
BstF5I	GGATG	2 cut(s)	172, 344
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstV2I	GAAGAC	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	172, 344
BtsIMutI	CAGTG	3 cut(s)	396, 396, 509
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	425, 538
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviQI	GTAC	2 cut(s)	425, 538
DdeI	CTNAG	2 cut(s)	145, 560
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	11, 526
Eco24I	GRGCYC	3 cut(s)	13, 285, 528
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	2 cut(s)	11, 526
Eco88I	CYCGRG	2 cut(s)	6, 284
EcoICRI	GAGCTC	2 cut(s)	11, 526
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	3 cut(s)	13, 285, 528
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	9 cut(s)	302, 359, 407, 483, 492, 514, 588, 590, 627
FaqI	GGGAC	1 cut(s)	321
FokI	GGATG	2 cut(s)	179, 331
FriOI	GRGCYC	3 cut(s)	13, 285, 528
HinfI	GANTC	2 cut(s)	533, 608
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	394, 427
Hpy188I	TCNGA	2 cut(s)	148, 523
Hpy8I	GTNNAC	2 cut(s)	394, 427
HpyAV	CCTTC	2 cut(s)	272, 412
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	158, 344, 444
HpyF3I	CTNAG	2 cut(s)	145, 560
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	499, 523, 531
LpnPI	CCDG	8 cut(s)	49, 149, 205, 301, 402, 515, 515, 542
LweI	GCATC	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	187, 457
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	5 cut(s)	39, 95, 161, 184, 485
MhlI	GDGCHC	3 cut(s)	13, 285, 528
MluCI	AATT	9 cut(s)	27, 43, 86, 133, 311, 439, 548, 566, 591
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	2 cut(s)	349, 501
MnlI	CCTC	5 cut(s)	280, 320, 415, 426, 594
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
NdeII	GATC	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	457
PaeR7I	CTCGAG	2 cut(s)	6, 284
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	608
Pfl23II	CGTACG	1 cut(s)	537
PflMI	CCANNNNNTGG	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	528
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp124BI	GAGCTC	2 cut(s)	13, 528
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspLI	CGTACG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	335
PspXI	VCTCGAGB	2 cut(s)	6, 284
RsaI	GTAC	2 cut(s)	426, 539
RsaNI	GTAC	2 cut(s)	425, 538
RseI	CAYNNNNRTG	1 cut(s)	502
SacI	GAGCTC	2 cut(s)	13, 528
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	3 cut(s)	13, 285, 528
SetI	ASST	8 cut(s)	13, 24, 133, 146, 331, 426, 528, 561
SfaNI	GCATC	1 cut(s)	353
Sfr274I	CTCGAG	2 cut(s)	6, 284
SinI	GGWCC	1 cut(s)	335
SlaI	CTCGAG	2 cut(s)	6, 284
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	6, 284
SmoI	CTYRAG	2 cut(s)	6, 284
Sse9I	AATT	9 cut(s)	27, 43, 86, 133, 311, 439, 548, 566, 591
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	2 cut(s)	94, 199
SstI	GAGCTC	2 cut(s)	13, 528
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	7, 211, 285
TasI	AATT	9 cut(s)	27, 43, 86, 133, 311, 439, 548, 566, 591
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	3 cut(s)	396, 403, 509
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspGWI	ACGGA	2 cut(s)	91, 115
TspRI	CASTG	3 cut(s)	396, 403, 509
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	311, 548
XhoI	CTCGAG	2 cut(s)	6, 284
XmnI	GAANNNNTTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.