Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015527

Physical Location & Seq

Genomic Coordinates Reverse (-)

45619609 .. 45620419

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG363900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTCGAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGTTCGAAGTGATTATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCGACAGAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

209

Amino Acids

23.9

Weight (kDa)

7.58

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27954
malus_domestica	MD00G1096100.v1.1
prunus_persica	Prupe.4G287800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496761
rosa_laevigata	RLG00000022458 RLG00000022506
rosa_multiflora	Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388030
rosa_rugosa	Rorug03G0286800
rosa_samantha	Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana	Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AcsI	RAATTY	3 cut(s)	272, 314, 551
AgsI	TTSAA	3 cut(s)	26, 278, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	537, 569
AluBI	AGCT	6 cut(s)	11, 22, 144, 187, 529, 562
AluI	AGCT	6 cut(s)	11, 22, 144, 187, 529, 562
Alw21I	GWGCWC	2 cut(s)	13, 531
Ama87I	CYCGRG	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	39, 421
ApoI	RAATTY	3 cut(s)	272, 314, 551
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	13, 531
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	13, 531
BbvI	GCAGC	2 cut(s)	51, 433
BccI	CCATC	2 cut(s)	107, 161
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	40, 422
BlsI	GCNGC	2 cut(s)	41, 423
Bme1390I	CCNGG	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	51, 433
BsiHKAI	GWGCWC	2 cut(s)	13, 531
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	211, 575
BsmI	GAATGC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	13, 531
Bsp143I	GATC	2 cut(s)	56, 286
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	415
BspT104I	TTCGAA	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	56, 286
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	227, 563
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	59, 289
BstMBI	GATC	2 cut(s)	56, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	51, 433
BstV2I	GAAGAC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	353
CviAII	CATG	4 cut(s)	319, 348, 431, 463
DdeI	CTNAG	2 cut(s)	227, 563
DpnI	GATC	2 cut(s)	58, 288
DpnII	GATC	2 cut(s)	56, 286
DraI	TTTAAA	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	11, 529
Eco24I	GRGCYC	2 cut(s)	13, 531
Eco53kI	GAGCTC	2 cut(s)	11, 529
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	2 cut(s)	11, 529
EcoT38I	GRGCYC	2 cut(s)	13, 531
FaeI	CATG	4 cut(s)	322, 351, 434, 466
FatI	CATG	4 cut(s)	318, 347, 430, 462
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	40, 422
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	2 cut(s)	13, 531
Fsp4HI	GCNGC	2 cut(s)	40, 422
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	40, 422
HapII	CCGG	2 cut(s)	211, 575
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	322, 351, 434, 466
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	2 cut(s)	185, 560
HinfI	GANTC	3 cut(s)	536, 578, 611
HpaII	CCGG	2 cut(s)	211, 575
Hpy188I	TCNGA	2 cut(s)	312, 526
Hpy188III	TCNNGA	2 cut(s)	147, 290
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	322, 347, 369, 421, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	227, 563
Hsp92II	CATG	4 cut(s)	322, 351, 434, 466
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	56, 286
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	5 cut(s)	224, 275, 405, 410, 588
Lsp1109I	GCAGC	2 cut(s)	51, 433
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	58, 288
MboI	GATC	2 cut(s)	56, 286
MboII	GAAGA	4 cut(s)	95, 184, 479, 488
MhlI	GDGCHC	2 cut(s)	13, 531
MluCI	AATT	9 cut(s)	26, 86, 125, 133, 272, 314, 442, 551, 569
MlyI	GAGTC	2 cut(s)	530, 572
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	3 cut(s)	66, 429, 597
MseI	TTAA	2 cut(s)	89, 179
MslI	CAYNNNNRTG	1 cut(s)	505
MspI	CCGG	2 cut(s)	211, 575
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	421
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	56, 286
NlaIII	CATG	4 cut(s)	322, 351, 434, 466
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	6
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	41, 423
PleI	GAGTC	2 cut(s)	530, 572
PpsI	GAGTC	2 cut(s)	530, 572
Psp124BI	GAGCTC	2 cut(s)	13, 531
PspN4I	GGNNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	2 cut(s)	13, 531
SaqAI	TTAA	2 cut(s)	89, 179
SatI	GCNGC	2 cut(s)	40, 422
Sau3AI	GATC	2 cut(s)	56, 286
SchI	GAGTC	2 cut(s)	530, 572
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	13, 531
Sfr274I	CTCGAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	9 cut(s)	26, 86, 125, 133, 272, 314, 442, 551, 569
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	2 cut(s)	13, 531
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	7, 50, 100
TasI	AATT	9 cut(s)	26, 86, 125, 133, 272, 314, 442, 551, 569
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	89, 179
Tru9I	TTAA	2 cut(s)	89, 179
TscAI	CASTG	1 cut(s)	512
TseI	GCWGC	2 cut(s)	39, 421
TspDTI	ATGAA	3 cut(s)	307, 419, 558
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	512
XapI	RAATTY	3 cut(s)	272, 314, 551
XceI	RCATGY	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	6
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.