RchiOBHm_Chr3g0496761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015527
Physical Location & Seq
Reverse (-)
48065166 .. 48066578
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45906

Sequence Viewer

Length: 1239 bp
ATGATCATGTATGGGGGTGAAGAAGGTTTCTCTTTGTTTTTGCATTTGGGAGAAAGCAAGTCCAGTTTTGATCTTGAGAAAGTAGTATGCAACCATGGTTTCTTCATGATGGCTCCAAACCGTTGGATTTCGTCTTCGAAAACCCTACAACGGCCCTTGAGACTCGCAGACTCAACCAAGTCAGTGATGGTTTCCATCTTAAAGCCATGTGTTTCTATTCATAAGAACTCTCTCATAGTTCGACTCCACAAAGTTAGTCCTAGCGACATATCAAAAAAAGATGAGGTTGCTATACTAGAACAAGTGCGTCGAATGCTTAGGATTTCCCATAAAGATGAAGAAAATGTAAAAGAGTATCATAAAAAGCTCTTCCAGCTCAAGGACAAGGACAACTACGACCATTACAAAGTCTGTTCTGGTAGAATGTTTCGTTCTCCTTCTCTCTTTGAAGATCTTGTCAAATGCCTTCTGTTATGTAACTGCAAGTATACACATCTACAACTCTTCTTCTGTTTTTTTTTGGTCACTTGTTCATATTCATTTAGTTTTCATTCATTTGTCTTCTTATTATATATAATGATTGATATTAGGTGGTCGAATTCATTGAAAATGGCTCGAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATTATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCAACAAAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

412

Amino Acids

47.7

Weight (kDa)

8.82

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccI GTMKAC 1 cut(s) 488
AcsI RAATTY 4 cut(s) 598, 881, 923, 1160
AfiI CCNNNNNNNGG 2 cut(s) 150, 379
AgsI TTSAA 5 cut(s) 449, 607, 635, 887, 1220
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 8 cut(s) 367, 376, 620, 631, 753, 796, 1138, 1171
AluI AGCT 8 cut(s) 367, 376, 620, 631, 753, 796, 1138, 1171
Alw21I GWGCWC 2 cut(s) 622, 1140
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 648, 1030
ApoI RAATTY 4 cut(s) 598, 881, 923, 1160
ArsI GACNNNNNNTTYG 2 cut(s) 1053, 1085
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 615
BanII GRGCYC 2 cut(s) 622, 1140
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 3 cut(s) 126, 553, 788
Bbv12I GWGCWC 2 cut(s) 622, 1140
BbvI GCAGC 2 cut(s) 660, 1042
BccI CCATC 5 cut(s) 103, 181, 203, 716, 770
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 1113, 1147
BclI TGATCA 2 cut(s) 3, 895
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 3 cut(s) 261, 296, 768
BfuAI ACCTGC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 451
BisI GCNGC 2 cut(s) 649, 1031
BlsI GCNGC 2 cut(s) 650, 1032
Bme1390I CCNGG 1 cut(s) 821
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 114, 949
BmrFI CCNGG 1 cut(s) 821
BpiI GAAGAC 3 cut(s) 126, 553, 788
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 95, 178, 362
BpuMI CCSGG 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 1183
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 379
Bse1I ACTGG 2 cut(s) 63, 1001
Bse3DI GCAATG 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 2 cut(s) 150, 379
BseMI GCAATG 1 cut(s) 658
BseNI ACTGG 2 cut(s) 63, 1001
BseXI GCAGC 2 cut(s) 660, 1042
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 622, 1140
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 2 cut(s) 820, 1184
BslI CCNNNNNNNGG 2 cut(s) 150, 379
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 2 cut(s) 318, 1160
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 622, 1140
Bsp143I GATC 6 cut(s) 3, 70, 451, 665, 706, 895
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 154
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 114, 949
BspMI ACCTGC 1 cut(s) 1024
BspQI GCTCTTC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 2 cut(s) 63, 1001
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
BssNAI GTATAC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 94
Bst1107I GTATAC 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 122, 1069
Bst6I CTCTTC 2 cut(s) 374, 509
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 958
BstDEI CTNAG 3 cut(s) 317, 836, 1172
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 781
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 6 cut(s) 6, 73, 454, 668, 709, 898
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
BstMWI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
BstNSI RCATGY 1 cut(s) 960
BstSCI CCNGG 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 660, 1042
BstV2I GAAGAC 3 cut(s) 126, 553, 788
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 123
BstYI RGATCY 1 cut(s) 451
BstZ17I GTATAC 1 cut(s) 489
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 189, 1121
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 1 cut(s) 958
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 296
CviAII CATG 8 cut(s) 7, 95, 106, 207, 928, 957, 1040, 1072
DdeI CTNAG 3 cut(s) 317, 836, 1172
DpnI GATC 6 cut(s) 5, 72, 453, 667, 708, 897
DpnII GATC 6 cut(s) 3, 70, 451, 665, 706, 895
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 374, 509
EarI CTCTTC 2 cut(s) 374, 509
Ecl136II GAGCTC 2 cut(s) 620, 1138
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 622, 1140
Eco53kI GAGCTC 2 cut(s) 620, 1138
Eco88I CYCGRG 1 cut(s) 615
EcoICRI GAGCTC 2 cut(s) 620, 1138
EcoRI GAATTC 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 622, 1140
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
FatI CATG 8 cut(s) 6, 94, 105, 206, 927, 956, 1039, 1071
FbaI TGATCA 2 cut(s) 3, 895
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 649, 1031
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 622, 1140
Fsp4HI GCNGC 2 cut(s) 649, 1031
FspBI CTAG 3 cut(s) 261, 296, 768
GlaI GCGC 1 cut(s) 961
GluI GCNGC 2 cut(s) 649, 1031
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 820, 1184
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 962
Hin1II CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HindIII AAGCTT 2 cut(s) 794, 1169
HinfI GANTC 6 cut(s) 162, 170, 243, 1145, 1187, 1220
HpaII CCGG 2 cut(s) 820, 1184
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 2 cut(s) 921, 1135
Hpy188III TCNNGA 4 cut(s) 74, 106, 756, 899
Hpy8I GTNNAC 1 cut(s) 489
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 4 cut(s) 17, 447, 476, 881
HpyCH4III ACNGT 2 cut(s) 122, 1069
HpyCH4V TGCA 9 cut(s) 43, 90, 483, 931, 956, 978, 1030, 1056, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
HpyF3I CTNAG 3 cut(s) 317, 836, 1172
Hsp92II CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
HspAI GCGC 1 cut(s) 960
Ksp22I TGATCA 2 cut(s) 3, 895
Kzo9I GATC 6 cut(s) 3, 70, 451, 665, 706, 895
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 118, 1135
LpnPI CCDG 8 cut(s) 76, 386, 402, 833, 884, 1014, 1019, 1197
Lsp1109I GCAGC 2 cut(s) 660, 1042
MaeI CTAG 3 cut(s) 261, 296, 768
MaeIII GTNAC 2 cut(s) 476, 523
MalI GATC 6 cut(s) 5, 72, 453, 667, 708, 897
MboI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 622, 1140
MlyI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
MmeI TCCRAC 2 cut(s) 104, 1113
MnlI CCTC 4 cut(s) 277, 675, 1038, 1206
MseI TTAA 3 cut(s) 200, 698, 788
MslI CAYNNNNRTG 2 cut(s) 333, 1114
MspI CCGG 2 cut(s) 820, 1184
MspR9I CCNGG 1 cut(s) 821
Mva1269I GAATGC 2 cut(s) 318, 1160
MwoI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 94
NdeII GATC 6 cut(s) 3, 70, 451, 665, 706, 895
NlaIII CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
NlaIV GGNNCC 2 cut(s) 114, 949
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 960
NspV TTCGAA 1 cut(s) 137
PaeI GCATGC 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 615
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 374
PctI GAATGC 2 cut(s) 318, 1160
PfeI GAWTC 1 cut(s) 1220
PkrI GCNGC 2 cut(s) 650, 1032
PleI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
PpsI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
Psp124BI GAGCTC 2 cut(s) 622, 1140
PspN4I GGNNCC 2 cut(s) 114, 949
PspPI GGNCC 1 cut(s) 153
PspXI VCTCGAGB 1 cut(s) 615
PsuI RGATCY 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 333, 1114
SacI GAGCTC 2 cut(s) 622, 1140
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 3 cut(s) 200, 698, 788
SatI GCNGC 2 cut(s) 649, 1031
Sau3AI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 2 cut(s) 622, 1140
Sfr274I CTCGAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 333, 1114
SmlI CTYRAG 4 cut(s) 74, 157, 377, 615
SmoI CTYRAG 4 cut(s) 74, 157, 377, 615
SphI GCATGC 1 cut(s) 960
SspI AATATT 1 cut(s) 808
SspMI CTAG 3 cut(s) 261, 296, 768
SstI GAGCTC 2 cut(s) 622, 1140
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 122, 1069
TaqI TCGA 7 cut(s) 137, 241, 310, 596, 616, 659, 709
TfiI GAWTC 1 cut(s) 1220
Tru1I TTAA 3 cut(s) 200, 698, 788
Tru9I TTAA 3 cut(s) 200, 698, 788
TscAI CASTG 2 cut(s) 189, 1121
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 2 cut(s) 648, 1030
Tsp45I GTSAC 1 cut(s) 523
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 2 cut(s) 189, 1121
XapI RAATTY 4 cut(s) 598, 881, 923, 1160
XceI RCATGY 1 cut(s) 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 3 cut(s) 261, 296, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.