Rw3G029000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015527
Physical Location & Seq
Reverse (-)
44125801 .. 44127136
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029000.1

Sequence Viewer

Length: 846 bp
ATGGCTCCAAACCGTTGGATTTCGTCTTCGAAAACCCTACAACGGCCCTTGAGACTCGCAGACTCAACCAAGTCAGTGATGGTTTCCATCTTAAAGCCATGTGTTTCTATTCATAAGAACTCTCTCATAGTTCGACTCCACAAAGTTAGTCCTAGCGACATATCAAAAAAAGATGAGGTTGCTATACTAGAACAAGTGCGTCGAATGCTTAGGATTTCCCATAAAGATGAAGAAAATGTAAAAGAGTATCATAAAAAGCTCTTCCAGCTCAAGGACAAGGACAACGACGACCATTACAAAGTCTGTTCTGGTAGAATGTTTCGTTCCCCGTCTCTCTTTGAAGATCTTGTCAAATGCCTTCTGTTATGTAACTGCAAATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCGACAGAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

281

Amino Acids

32.35

Weight (kDa)

8.86

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AcsI RAATTY 3 cut(s) 488, 530, 767
AfiI CCNNNNNNNGG 2 cut(s) 42, 271
AgsI TTSAA 3 cut(s) 341, 494, 827
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AluBI AGCT 5 cut(s) 259, 268, 403, 745, 778
AluI AGCT 5 cut(s) 259, 268, 403, 745, 778
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 46, 336
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 3 cut(s) 488, 530, 767
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 18, 395
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 649
BccI CCATC 3 cut(s) 73, 95, 377
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 720, 754
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 46, 336
BfaI CTAG 2 cut(s) 153, 188
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 343
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme1390I CCNGG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 6, 556
BmrFI CCNGG 1 cut(s) 428
BpiI GAAGAC 2 cut(s) 18, 395
Bpu10I CCTNAGC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 70, 254
BpuMI CCSGG 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 271
Bse1I ACTGG 1 cut(s) 608
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 2 cut(s) 42, 271
BseNI ACTGG 1 cut(s) 608
BseXI GCAGC 1 cut(s) 649
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 2 cut(s) 427, 791
BslI CCNNNNNNNGG 2 cut(s) 42, 271
BsmAI GTCTC 2 cut(s) 46, 336
BsmBI CGTCTC 1 cut(s) 336
BsmI GAATGC 2 cut(s) 210, 767
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 2 cut(s) 343, 502
BspANI GGCC 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 6, 556
BspMI ACCTGC 1 cut(s) 631
BspQI GCTCTTC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 29
BsrI ACTGG 1 cut(s) 608
BssMI GATC 2 cut(s) 343, 502
Bst4CI ACNGT 2 cut(s) 14, 676
Bst6I CTCTTC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 3 cut(s) 209, 443, 779
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 2 cut(s) 346, 505
BstMAI GTCTC 2 cut(s) 46, 336
BstMBI GATC 2 cut(s) 343, 502
BstMWI GCNNNNNNNGC 3 cut(s) 205, 265, 637
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 2 cut(s) 18, 395
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 81, 728
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 565
CfoI GCGC 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 45
CseI GACGC 1 cut(s) 188
CviAII CATG 5 cut(s) 99, 535, 564, 647, 679
DdeI CTNAG 3 cut(s) 209, 443, 779
DpnI GATC 2 cut(s) 345, 504
DpnII GATC 2 cut(s) 343, 502
DraI TTTAAA 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 745
EcoICRI GAGCTC 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 5 cut(s) 102, 538, 567, 650, 682
FatI CATG 5 cut(s) 98, 534, 563, 646, 678
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 2 cut(s) 153, 188
GlaI GCGC 1 cut(s) 568
GluI GCNGC 1 cut(s) 638
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 427, 791
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 569
Hin1II CATG 5 cut(s) 102, 538, 567, 650, 682
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HindIII AAGCTT 2 cut(s) 401, 776
HinfI GANTC 6 cut(s) 54, 62, 135, 752, 794, 827
HpaII CCGG 2 cut(s) 427, 791
Hpy188I TCNGA 2 cut(s) 528, 742
Hpy188III TCNNGA 1 cut(s) 506
Hpy99I CGWCG 2 cut(s) 204, 290
HpyAV CCTTC 2 cut(s) 368, 488
HpyCH4III ACNGT 2 cut(s) 14, 676
HpyCH4V TGCA 6 cut(s) 375, 538, 563, 585, 637, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 265, 637
HpyF3I CTNAG 3 cut(s) 209, 443, 779
Hsp92II CATG 5 cut(s) 102, 538, 567, 650, 682
HspAI GCGC 1 cut(s) 567
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 343, 502
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 10, 742
LpnPI CCDG 7 cut(s) 278, 294, 440, 491, 621, 626, 804
Lsp1109I GCAGC 1 cut(s) 649
MaeI CTAG 2 cut(s) 153, 188
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 345, 504
MboI GATC 2 cut(s) 343, 502
MboII GAAGA 7 cut(s) 18, 242, 253, 353, 400, 695, 704
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 6 cut(s) 377, 488, 530, 658, 767, 785
MlyI GAGTC 5 cut(s) 48, 56, 129, 746, 788
MmeI TCCRAC 1 cut(s) 720
MnlI CCTC 3 cut(s) 169, 645, 813
MseI TTAA 2 cut(s) 92, 395
MslI CAYNNNNRTG 2 cut(s) 225, 721
MspI CCGG 2 cut(s) 427, 791
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 2 cut(s) 210, 767
MwoI GCNNNNNNNGC 3 cut(s) 205, 265, 637
NciI CCSGG 1 cut(s) 428
NdeII GATC 2 cut(s) 343, 502
NlaIII CATG 5 cut(s) 102, 538, 567, 650, 682
NlaIV GGNNCC 2 cut(s) 6, 556
NspI RCATGY 1 cut(s) 567
NspV TTCGAA 1 cut(s) 29
PaeI GCATGC 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 2 cut(s) 210, 767
PfeI GAWTC 1 cut(s) 827
PkrI GCNGC 1 cut(s) 639
PleI GAGTC 5 cut(s) 48, 56, 129, 746, 788
PpsI GAGTC 5 cut(s) 48, 56, 129, 746, 788
Psp124BI GAGCTC 1 cut(s) 747
PspN4I GGNNCC 2 cut(s) 6, 556
PspPI GGNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 225, 721
SacI GAGCTC 1 cut(s) 747
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 92, 395
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 2 cut(s) 343, 502
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 5 cut(s) 48, 56, 129, 746, 788
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 747
SetI ASST 9 cut(s) 180, 261, 270, 405, 460, 550, 645, 747, 780
SfuI TTCGAA 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 225, 721
SmlI CTYRAG 2 cut(s) 49, 269
SmoI CTYRAG 2 cut(s) 49, 269
SphI GCATGC 1 cut(s) 567
Sse9I AATT 6 cut(s) 377, 488, 530, 658, 767, 785
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 153, 188
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 14, 676
TaqI TCGA 3 cut(s) 29, 133, 202
TasI AATT 6 cut(s) 377, 488, 530, 658, 767, 785
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 2 cut(s) 92, 395
Tru9I TTAA 2 cut(s) 92, 395
TscAI CASTG 2 cut(s) 81, 728
TseI GCWGC 1 cut(s) 637
TspDTI ATGAA 5 cut(s) 101, 243, 523, 635, 774
TspRI CASTG 2 cut(s) 81, 728
XapI RAATTY 3 cut(s) 488, 530, 767
XceI RCATGY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 2 cut(s) 153, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.