Rmu_sc0001832.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001832.1
OG0015527
Physical Location & Seq
Forward (+)
27647 .. 28093
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001832.1_g000011.1.cds

Sequence Viewer

Length: 447 bp
atggctcgagctctttgtgagcttcaatttgagccaagcagcaatgcttcgatgagatcaaacggacaaaagaggcagagagaagaattaaagattgttcgaagtgattatgatggtaaagaaaaactaggtaattttccaagctcacgagaacttgctagattggatgggaagactttaaagaagcttaccaataatattcttggctaccgggcaaaatacattctaagtcttgctaaaggtgtggagagtggaaagataggacttgctgaatttgaagggcttgatcaggagaaagatgatgtgtttcagaaattcatgcaaataaaaggttttggttcctttgcatgcgccaatgctatgatgtgcattggatattatcacaaagttccagtagatactgaaactataaggcatttgcagcaggtacccattacttcactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

148

Amino Acids

16.68

Weight (kDa)

9.13

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
Acc65I GGTACC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 427
AcsI RAATTY 2 cut(s) 272, 314
AfaI GTAC 1 cut(s) 429
AgsI TTSAA 2 cut(s) 26, 278
AluBI AGCT 4 cut(s) 11, 22, 144, 187
AluI AGCT 4 cut(s) 11, 22, 144, 187
Alw21I GWGCWC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 39, 421
ApoI RAATTY 2 cut(s) 272, 314
Asp718I GGTACC 1 cut(s) 427
AspLEI GCGC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 6
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 51, 433
BccI CCATC 2 cut(s) 107, 161
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 212
BfaI CTAG 2 cut(s) 128, 159
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 2 cut(s) 40, 422
BlsI GCNGC 2 cut(s) 41, 423
Bme1390I CCNGG 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 340, 429
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 49
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 51, 433
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 56, 286
BspLI GGNNCC 2 cut(s) 340, 429
BspMI ACCTGC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 392
BssMI GATC 2 cut(s) 56, 286
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 2 cut(s) 59, 289
BstMBI GATC 2 cut(s) 56, 286
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 51, 433
BstV2I GAAGAC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 319, 348
CviJI RGCY 8 cut(s) 5, 11, 22, 34, 144, 187, 207, 283
CviKI_1 RGCY 8 cut(s) 5, 11, 22, 34, 144, 187, 207, 283
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 1 cut(s) 227
DpnI GATC 2 cut(s) 58, 288
DpnII GATC 2 cut(s) 56, 286
DraI TTTAAA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 2 cut(s) 322, 351
FaiI YATR 5 cut(s) 111, 320, 349, 362, 410
FatI CATG 2 cut(s) 318, 347
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 40, 422
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 40, 422
FspBI CTAG 2 cut(s) 128, 159
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 40, 422
HapII CCGG 1 cut(s) 211
HhaI GCGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 322, 351
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 147, 290
HpyAV CCTTC 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 322, 347, 369, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 227
Hsp92II CATG 2 cut(s) 322, 351
HspAI GCGC 1 cut(s) 351
KpnI GGTACC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 56, 286
LpnPI CCDG 4 cut(s) 224, 275, 405, 410
Lsp1109I GCAGC 2 cut(s) 51, 433
MaeI CTAG 2 cut(s) 128, 159
MalI GATC 2 cut(s) 58, 288
MboI GATC 2 cut(s) 56, 286
MboII GAAGA 2 cut(s) 95, 184
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 5 cut(s) 26, 86, 133, 272, 314
MnlI CCTC 1 cut(s) 66
MseI TTAA 3 cut(s) 89, 179, 445
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 421
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 56, 286
NlaIII CATG 2 cut(s) 322, 351
NlaIV GGNNCC 2 cut(s) 340, 429
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 100
PaeI GCATGC 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 6
PkrI GCNGC 2 cut(s) 41, 423
Psp124BI GAGCTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 340, 429
PspXI VCTCGAGB 1 cut(s) 6
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 89, 179, 445
SatI GCNGC 2 cut(s) 40, 422
Sau3AI GATC 2 cut(s) 56, 286
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 13
SetI ASST 8 cut(s) 13, 24, 133, 146, 189, 244, 334, 429
Sfr274I CTCGAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SphI GCATGC 1 cut(s) 351
Sse9I AATT 5 cut(s) 26, 86, 133, 272, 314
SspI AATATT 1 cut(s) 199
SspMI CTAG 2 cut(s) 128, 159
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 210
TaqI TCGA 3 cut(s) 7, 50, 100
TasI AATT 5 cut(s) 26, 86, 133, 272, 314
Tru1I TTAA 3 cut(s) 89, 179, 445
Tru9I TTAA 3 cut(s) 89, 179, 445
TseI GCWGC 2 cut(s) 39, 421
TspDTI ATGAA 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 78
XapI RAATTY 2 cut(s) 272, 314
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 2 cut(s) 128, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.