Rh3DG367200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015527
Physical Location & Seq
Reverse (-)
46086592 .. 46087425
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG367200.1

Sequence Viewer

Length: 630 bp
ATGGCTCGAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGTTCGAAGTGATTATGATGGTAAAGAAAAACTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAGAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGTGACAGAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

209

Amino Acids

23.9

Weight (kDa)

7.58

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
AcsI RAATTY 3 cut(s) 272, 314, 551
AgsI TTSAA 3 cut(s) 26, 278, 611
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 6 cut(s) 11, 22, 144, 187, 529, 562
AluI AGCT 6 cut(s) 11, 22, 144, 187, 529, 562
Alw21I GWGCWC 2 cut(s) 13, 531
Ama87I CYCGRG 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 39, 421
ApoI RAATTY 3 cut(s) 272, 314, 551
AspLEI GCGC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 6
BanII GRGCYC 2 cut(s) 13, 531
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 13, 531
BbvI GCAGC 2 cut(s) 51, 433
BccI CCATC 2 cut(s) 107, 161
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 212
BfaI CTAG 2 cut(s) 128, 159
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 2 cut(s) 40, 422
BlsI GCNGC 2 cut(s) 41, 423
Bme1390I CCNGG 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 574
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 49
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 51, 433
BsiHKAI GWGCWC 2 cut(s) 13, 531
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 211, 575
BsmI GAATGC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 13, 531
Bsp143I GATC 2 cut(s) 56, 286
BspLI GGNNCC 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 392
BssMI GATC 2 cut(s) 56, 286
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 460
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 227, 563
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 2 cut(s) 59, 289
BstMBI GATC 2 cut(s) 56, 286
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 51, 433
BstV2I GAAGAC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 512
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 353
CviAII CATG 4 cut(s) 319, 348, 431, 463
DdeI CTNAG 2 cut(s) 227, 563
DpnI GATC 2 cut(s) 58, 288
DpnII GATC 2 cut(s) 56, 286
DraI TTTAAA 1 cut(s) 180
Ecl136II GAGCTC 2 cut(s) 11, 529
Eco24I GRGCYC 2 cut(s) 13, 531
Eco53kI GAGCTC 2 cut(s) 11, 529
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 2 cut(s) 11, 529
EcoT38I GRGCYC 2 cut(s) 13, 531
FaeI CATG 4 cut(s) 322, 351, 434, 466
FatI CATG 4 cut(s) 318, 347, 430, 462
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 40, 422
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 2 cut(s) 13, 531
Fsp4HI GCNGC 2 cut(s) 40, 422
FspBI CTAG 2 cut(s) 128, 159
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 40, 422
HapII CCGG 2 cut(s) 211, 575
HhaI GCGC 1 cut(s) 353
Hin1II CATG 4 cut(s) 322, 351, 434, 466
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HindIII AAGCTT 2 cut(s) 185, 560
HinfI GANTC 3 cut(s) 536, 578, 611
HpaII CCGG 2 cut(s) 211, 575
Hpy188I TCNGA 2 cut(s) 312, 526
Hpy188III TCNNGA 2 cut(s) 147, 290
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 322, 347, 369, 421, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 2 cut(s) 227, 563
Hsp92II CATG 4 cut(s) 322, 351, 434, 466
HspAI GCGC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 56, 286
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 5 cut(s) 224, 275, 405, 410, 588
Lsp1109I GCAGC 2 cut(s) 51, 433
MaeI CTAG 2 cut(s) 128, 159
MaeIII GTNAC 1 cut(s) 446
MalI GATC 2 cut(s) 58, 288
MboI GATC 2 cut(s) 56, 286
MboII GAAGA 4 cut(s) 95, 184, 479, 488
MhlI GDGCHC 2 cut(s) 13, 531
MluCI AATT 8 cut(s) 26, 86, 133, 272, 314, 442, 551, 569
MlyI GAGTC 2 cut(s) 530, 572
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 3 cut(s) 66, 429, 597
MseI TTAA 2 cut(s) 89, 179
MslI CAYNNNNRTG 1 cut(s) 505
MspI CCGG 2 cut(s) 211, 575
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 421
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 56, 286
NlaIII CATG 4 cut(s) 322, 351, 434, 466
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 100
PaeI GCATGC 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 6
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 2 cut(s) 41, 423
PleI GAGTC 2 cut(s) 530, 572
PpsI GAGTC 2 cut(s) 530, 572
Psp124BI GAGCTC 2 cut(s) 13, 531
PspN4I GGNNCC 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 505
SacI GAGCTC 2 cut(s) 13, 531
SaqAI TTAA 2 cut(s) 89, 179
SatI GCNGC 2 cut(s) 40, 422
Sau3AI GATC 2 cut(s) 56, 286
SchI GAGTC 2 cut(s) 530, 572
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 13, 531
Sfr274I CTCGAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SphI GCATGC 1 cut(s) 351
Sse9I AATT 8 cut(s) 26, 86, 133, 272, 314, 442, 551, 569
SspI AATATT 1 cut(s) 199
SspMI CTAG 2 cut(s) 128, 159
SstI GAGCTC 2 cut(s) 13, 531
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 3 cut(s) 7, 50, 100
TasI AATT 8 cut(s) 26, 86, 133, 272, 314, 442, 551, 569
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 89, 179
Tru9I TTAA 2 cut(s) 89, 179
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 39, 421
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 307, 419, 558
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 512
XapI RAATTY 3 cut(s) 272, 314, 551
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 2 cut(s) 128, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.