Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000542.1

Orthogroup ID

OG0015527

Physical Location & Seq

Genomic Coordinates Forward (+)

50449 .. 51045

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000542.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggctcgagctctttgtgagcttcaatttgagccaagcagcaatgcttcgatgagatcaaacggacaaaagaggcagagagaagaattaaagattgttcgaagtgattatgatggtaaagaaaaactaggtaattttccaagctcacgagaacttgctagattggatgggaagactttaaaaaagcttaccaacaatattcttggctaccgggcaaaatacattctaagtcttgctaaaggtgtggagagtggaaagataggacttgctgaatttgaagggcttgatcaggagaaagatgatgtgtttcagaaattcatgcaaataaaaggttttggttcctttgcatgcgccaatgctatgatgtgcattggatattatcacaaagttccagtagatactgaaactataaggcatttgcagcaggttcatgggaggaaaaattgcgacagaaatactgttatggaagatgtggaagaaatctataagaagtatgccccatttcagtgcttggcatattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

174

Amino Acids

19.96

Weight (kDa)

8.89

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27954
malus_domestica	MD00G1096100.v1.1
prunus_persica	Prupe.4G287800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496761
rosa_laevigata	RLG00000022458 RLG00000022506
rosa_multiflora	Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388030
rosa_rugosa	Rorug03G0286800
rosa_samantha	Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana	Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	272, 314
AgsI	TTSAA	2 cut(s)	26, 278
AluBI	AGCT	4 cut(s)	11, 22, 144, 187
AluI	AGCT	4 cut(s)	11, 22, 144, 187
Alw21I	GWGCWC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	39, 421
ApoI	RAATTY	2 cut(s)	272, 314
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	51, 433
BccI	CCATC	2 cut(s)	107, 161
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	2 cut(s)	128, 159
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	40, 422
BlsI	GCNGC	2 cut(s)	41, 423
Bme1390I	CCNGG	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	51, 433
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	56, 286
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	415
BspT104I	TTCGAA	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	56, 286
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	59, 289
BstMBI	GATC	2 cut(s)	56, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	51, 433
BstV2I	GAAGAC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	353
CviAII	CATG	3 cut(s)	319, 348, 431
CviJI	RGCY	8 cut(s)	5, 11, 22, 34, 144, 187, 207, 283
CviKI_1	RGCY	8 cut(s)	5, 11, 22, 34, 144, 187, 207, 283
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	2 cut(s)	58, 288
DpnII	GATC	2 cut(s)	56, 286
DraI	TTTAAA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	3 cut(s)	322, 351, 434
FatI	CATG	3 cut(s)	318, 347, 430
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	40, 422
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	40, 422
FspBI	CTAG	2 cut(s)	128, 159
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	40, 422
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	322, 351, 434
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	185
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	147, 290
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	322, 347, 369, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	322, 351, 434
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	56, 286
LpnPI	CCDG	4 cut(s)	224, 275, 405, 410
Lsp1109I	GCAGC	2 cut(s)	51, 433
MaeI	CTAG	2 cut(s)	128, 159
MalI	GATC	2 cut(s)	58, 288
MboI	GATC	2 cut(s)	56, 286
MboII	GAAGA	4 cut(s)	95, 184, 479, 488
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	26, 86, 133, 272, 314, 442
MnlI	CCTC	2 cut(s)	66, 429
MseI	TTAA	2 cut(s)	89, 179
MslI	CAYNNNNRTG	1 cut(s)	505
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	421
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	56, 286
NlaIII	CATG	3 cut(s)	322, 351, 434
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	41, 423
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	89, 179
SatI	GCNGC	2 cut(s)	40, 422
Sau3AI	GATC	2 cut(s)	56, 286
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	8 cut(s)	13, 24, 133, 146, 189, 244, 334, 429
Sfr274I	CTCGAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	6 cut(s)	26, 86, 133, 272, 314, 442
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	128, 159
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	7, 50, 100
TasI	AATT	6 cut(s)	26, 86, 133, 272, 314, 442
Tru1I	TTAA	2 cut(s)	89, 179
Tru9I	TTAA	2 cut(s)	89, 179
TscAI	CASTG	1 cut(s)	512
TseI	GCWGC	2 cut(s)	39, 421
TspDTI	ATGAA	2 cut(s)	307, 419
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	272, 314
XceI	RCATGY	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	6
XspI	CTAG	2 cut(s)	128, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.