Rorug03G0286800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015527
Physical Location & Seq
Forward (+)
29076597 .. 29077950
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0286800.1

Sequence Viewer

Length: 912 bp
ATGCAGCGTGTCTGGTCATTAGGGATGGTGCGACTTAACTTCGACATGCTCCATTTGATTAAATGGTCACCTAATTTCTCGTCATCTACCTACAAGAACACTTTTGCGCAAGTATGGGTGCACTTTTGGGATTTAGGTCTTGCTTATTGGGATCAGCAAACCCTCTTTGAAATCGCATCTGGTATTGGTACGCCTCTTAAGCTTGATCCCCGCACTAAGAACCGTGCTATAGGATTAGTAACTAGGGCATCTGGGGACGTCGTAGTGATTGGGATTGAATATGAATCCGAGCCAGATATCTGCTACAATTGTGGGATTGTTGGCCATGTCGCTGCCAACTGTCATTCTGAGACCTTGGAGAAACCTGTTGCTGCCGTCCCAAATTACCGTGGCATGTCAGTTGAACGAACTGGACGGAAACGAAGAAAGAAAAATAGGTTGCCCAAATATGTGCGCAGTTCAAAATTAGGTCCAATTTCTCCACTGGAAATGAACATGGAAGCTACTCCAATTGTTGAGGCTGAGATCGAAGTGGCTAGAGTGCCTACTGTGTTGGGGGAATCGGACATTGTCAAGCCAACTCCAGCTACAGAAGTGCAGGTGAAGGCTTCTCTTTTGATCCTTACGCAGACTGTAGACTCCGGTGATAGCGTACATCCAGGCTTCCAGAGGTTGGTCATTAAGATTGAAGCCCAATCTTCAAGCTCCGCATCAACTCAAGTGTTGTTAGCAGTAGCTCGTTCTATTGTGGTAGTTAATCAAGCCTCAGAAGATTGTCAGTTGAACGATACTACTGAGGTGTTAGAGGAAGGACAACAGATCACAGTTTATGTTGCTCTTGATGGTATTCAGTGCATGTTGACAACAGTTTATGCCAAAACAACTATTGTTGGTCGTAGAGAACTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

303

Amino Acids

33.56

Weight (kDa)

6.54

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 81 - 115 3.6e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 589
AatII GACGTC 1 cut(s) 261
Acc16I TGCGCA 2 cut(s) 108, 455
Acc36I ACCTGC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 673
AccI GTMKAC 1 cut(s) 636
AciI CCGC 2 cut(s) 211, 708
AclWI GGATC 3 cut(s) 159, 200, 613
AcoI YGGCCR 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 190, 654
AfiI CCNNNNNNNGG 1 cut(s) 673
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 7 cut(s) 170, 278, 404, 462, 689, 702, 784
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 5 cut(s) 202, 503, 587, 705, 737
AluI AGCT 5 cut(s) 202, 503, 587, 705, 737
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 3 cut(s) 159, 200, 613
AoxI GGCC 1 cut(s) 322
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 4, 332, 371
AspLEI GCGC 2 cut(s) 109, 456
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 60, 613, 656
AvaII GGWCC 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 16, 319, 358
BccI CCATC 2 cut(s) 19, 836
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 243, 537
BfmI CTRYAG 3 cut(s) 228, 588, 633
BfrI CTTAAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 3 cut(s) 5, 333, 372
BlsI GCNGC 3 cut(s) 6, 334, 373
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 3 cut(s) 185, 257, 719
BpmI CTGGAG 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 354, 388
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 415, 489
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 354, 388
BseGI GGATG 2 cut(s) 30, 655
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 4 cut(s) 339, 513, 780, 786
BseNI ACTGG 2 cut(s) 415, 489
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 3 cut(s) 16, 319, 358
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 2 cut(s) 269, 362
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 269, 362
BsnI GGCC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 5 cut(s) 151, 205, 525, 618, 819
BspACI CCGC 2 cut(s) 211, 708
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 4 cut(s) 340, 514, 779, 787
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 3 cut(s) 159, 200, 613
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 2 cut(s) 415, 489
BssECI CCNNGG 2 cut(s) 354, 388
BssMI GATC 5 cut(s) 151, 205, 525, 618, 819
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 7 cut(s) 224, 341, 389, 550, 634, 826, 868
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 216, 348, 522, 766, 795
BstDSI CCRYGG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 30, 655
BstHHI GCGC 2 cut(s) 109, 456
BstKTI GATC 5 cut(s) 154, 208, 528, 621, 822
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 5 cut(s) 151, 205, 525, 618, 819
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 3 cut(s) 49, 397, 859
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 3 cut(s) 228, 588, 633
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 16, 319, 358
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 30, 655
BtsIMutI CAGTG 2 cut(s) 482, 857
BveI ACCTGC 1 cut(s) 589
CfoI GCGC 2 cut(s) 109, 456
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 189, 653
CviAII CATG 5 cut(s) 46, 326, 394, 496, 856
CviQI GTAC 2 cut(s) 189, 653
DdeI CTNAG 5 cut(s) 216, 348, 522, 766, 795
DpnI GATC 5 cut(s) 153, 207, 527, 620, 821
DpnII GATC 5 cut(s) 151, 205, 525, 618, 819
EaeI YGGCCR 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 658
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 5 cut(s) 49, 329, 397, 499, 859
FaqI GGGAC 2 cut(s) 269, 362
FatI CATG 5 cut(s) 45, 325, 393, 495, 855
FauI CCCGC 1 cut(s) 218
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 3 cut(s) 5, 333, 372
FokI GGATG 2 cut(s) 37, 642
Fsp4HI GCNGC 3 cut(s) 5, 333, 372
FspBI CTAG 2 cut(s) 243, 537
FspI TGCGCA 2 cut(s) 108, 455
GlaI GCGC 2 cut(s) 108, 455
GluI GCNGC 3 cut(s) 5, 333, 372
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 642
HhaI GCGC 2 cut(s) 109, 456
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 5 cut(s) 49, 329, 397, 499, 859
Hin6I GCGC 2 cut(s) 107, 454
HinP1I GCGC 2 cut(s) 107, 454
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 284, 560, 638
HpaII CCGG 1 cut(s) 642
HphI GGTGA 3 cut(s) 60, 613, 656
Hpy166II GTNNAC 3 cut(s) 121, 637, 861
Hpy188I TCNGA 4 cut(s) 289, 349, 565, 769
Hpy188III TCNNGA 2 cut(s) 667, 839
Hpy8I GTNNAC 3 cut(s) 121, 637, 861
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 598, 803
HpyCH4III ACNGT 7 cut(s) 224, 341, 389, 550, 634, 826, 868
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 4, 121, 598, 855
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 5 cut(s) 216, 348, 522, 766, 795
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 5 cut(s) 49, 329, 397, 499, 859
HspAI GCGC 2 cut(s) 107, 454
Kzo9I GATC 5 cut(s) 151, 205, 525, 618, 819
LmnI GCTCC 2 cut(s) 54, 710
Lsp1109I GCAGC 3 cut(s) 16, 319, 358
LweI GCATC 3 cut(s) 185, 257, 719
MaeI CTAG 2 cut(s) 243, 537
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 66, 238
MalI GATC 5 cut(s) 153, 207, 527, 620, 821
MboI GATC 5 cut(s) 151, 205, 525, 618, 819
MboII GAAGA 3 cut(s) 435, 690, 782
MfeI CAATTG 2 cut(s) 307, 510
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 6 cut(s) 73, 307, 382, 464, 474, 510
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 7 cut(s) 173, 204, 511, 663, 775, 790, 799
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MseI TTAA 5 cut(s) 36, 60, 198, 681, 756
Msp20I TGGCCA 1 cut(s) 324
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 660
MunI CAATTG 2 cut(s) 307, 510
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 5 cut(s) 151, 205, 525, 618, 819
NlaIII CATG 5 cut(s) 49, 329, 397, 499, 859
NmuCI GTSAC 1 cut(s) 66
NsbI TGCGCA 2 cut(s) 108, 455
NspI RCATGY 3 cut(s) 49, 397, 859
PaqCI CACCTGC 1 cut(s) 589
PfeI GAWTC 2 cut(s) 284, 560
PflFI GACNNNGTC 1 cut(s) 569
PflMI CCANNNNNTGG 1 cut(s) 673
PkrI GCNGC 3 cut(s) 6, 334, 373
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 658
PspPI GGNCC 1 cut(s) 470
PsyI GACNNNGTC 1 cut(s) 569
RsaI GTAC 2 cut(s) 190, 654
RsaNI GTAC 2 cut(s) 189, 653
SaqAI TTAA 5 cut(s) 36, 60, 198, 681, 756
SatI GCNGC 3 cut(s) 5, 333, 372
Sau3AI GATC 5 cut(s) 151, 205, 525, 618, 819
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 3 cut(s) 185, 257, 719
SfcI CTRYAG 3 cut(s) 228, 588, 633
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 197, 717
SmoI CTYRAG 2 cut(s) 197, 717
Sse9I AATT 6 cut(s) 73, 307, 382, 464, 474, 510
SsiI CCGC 2 cut(s) 211, 708
SspMI CTAG 2 cut(s) 243, 537
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 7 cut(s) 224, 341, 389, 550, 634, 826, 868
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 42, 528
TasI AATT 6 cut(s) 73, 307, 382, 464, 474, 510
TfiI GAWTC 2 cut(s) 284, 560
Tru1I TTAA 5 cut(s) 36, 60, 198, 681, 756
Tru9I TTAA 5 cut(s) 36, 60, 198, 681, 756
TscAI CASTG 2 cut(s) 489, 857
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 3 cut(s) 4, 332, 371
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 297, 506
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 489, 857
Tth111I GACNNNGTC 1 cut(s) 569
Van91I CCANNNNNTGG 1 cut(s) 673
Vha464I CTTAAG 1 cut(s) 197
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 470
XceI RCATGY 3 cut(s) 49, 397, 859
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 2 cut(s) 243, 537
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.