Prupe.4G287800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015527
Physical Location & Seq
Reverse (-)
25221887 .. 25222924
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G287800.1

Sequence Viewer

Length: 864 bp
ATGATGGCTCCCAACCGTTGGATTCCATCTTCAAAAACACTCCAACGTCCACTGAGACTTGCAGACTCAACTACTTGTGTCACCGTTTCGATCTTACATCCGCCTAATCGGACCTCTCTCCTTGTTCGAGTTCATGACGTTCAAAACATCTCATATGCAGATCAACGTGCTATACTGAACCAAGTGGCTCGAATGCTAAGGATATCTGAGAGAGATGAAATGGACATGAGGGAATATCAGAAAGTGCATCCAGAAGCGAAAGAGAAAGGCTTCGGTCGAGTTTTCCGGTCGCCTACTCTCTTTGAAGACCTTGTCAAGTGTCTTCTTCTCTGTAATTGCACGTGGTCGAATACATTGAAAATGGCTCGAGCTCTCTGTGAGCTTCAATTTGAGCTAAGTAATAATAATAAAGCTTCAGCAAGGTCGGGACAAAAGAGGAAGAGAGAGACGTCAAATACATGGCCATGCAAAGTTATAAATCAAATGGATGGTGGGATTTTAGGCAATTTCCCAACTTCAAAAGAACTCGCTGGCCTTGATGAGAATACTTTAGTCAGCGAGCATAAAGTTCTTGGGTACAGAGCAAAACTCATTCTAAAACTTGCTAGAGATGTGGAGCGTGGGACGATACGACTTCATGAGTTTGAGGAAGCCCTCGACGACATGTCGTTTAATCAGGATCAAGTGTTTCGGAGACTCATGAAGATCAAAGGGTTTGGTTCATATGCATGTGCCAATGCATTGATGTGCATTGGATATTATCAGCACGTTCCACTCGATACTGAAACTATAAGACACTTACAAGAGGCCAGTTCAACAAAACATACACTTTACTCTTTTATTTATTTATTTATTTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

288

Amino Acids

33.09

Weight (kDa)

9.16

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AatII GACGTC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 18
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 399
AcvI CACGTG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 7 cut(s) 33, 143, 305, 358, 386, 519, 816
AhdI GACNNNNNGTC 1 cut(s) 664
AluBI AGCT 4 cut(s) 371, 382, 394, 413
AluI AGCT 4 cut(s) 371, 382, 394, 413
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 49, 440, 688
AlwI GGATC 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 3 cut(s) 461, 532, 807
Asp700I GAANNNNTTC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 463
BanII GRGCYC 1 cut(s) 373
BbrPI CACGTG 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 312, 314
Bbv12I GWGCWC 1 cut(s) 373
BccI CCATC 2 cut(s) 34, 482
BcoDI GTCTC 3 cut(s) 49, 440, 688
BfaI CTAG 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 111
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 312, 314
BplI GAGNNNNNCTC 2 cut(s) 573, 605
Bpu10I CCTNAGC 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 449
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 810
BseGI GGATG 3 cut(s) 97, 247, 493
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 44, 198
BseNI ACTGG 1 cut(s) 810
Bsh1285I CGRYCG 2 cut(s) 277, 290
BshFI GGCC 3 cut(s) 463, 534, 809
BsiEI CGRYCG 2 cut(s) 277, 290
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 441, 637
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 49, 440, 688
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 441, 637
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 3 cut(s) 463, 534, 809
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 90, 160, 679, 705
BspACI CCGC 1 cut(s) 101
BspANI GGCC 3 cut(s) 463, 534, 809
BspCNI CTCAG 2 cut(s) 45, 199
BspHI TCATGA 3 cut(s) 133, 637, 699
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 687
BsrI ACTGG 1 cut(s) 810
BssMI GATC 4 cut(s) 90, 160, 679, 705
BssNI GRCGYC 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 17, 85
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 532, 560
BstDEI CTNAG 4 cut(s) 53, 197, 207, 395
BstF5I GGATG 3 cut(s) 97, 247, 493
BstKTI GATC 4 cut(s) 93, 163, 682, 708
BstMAI GTCTC 3 cut(s) 49, 440, 688
BstMBI GATC 4 cut(s) 90, 160, 679, 705
BstMCI CGRYCG 2 cut(s) 277, 290
BstNSI RCATGY 2 cut(s) 667, 732
BstV2I GAAGAC 2 cut(s) 312, 314
BsuRI GGCC 3 cut(s) 463, 534, 809
BtsCI GGATG 3 cut(s) 97, 247, 493
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 532, 560
CciI TCATGA 3 cut(s) 133, 637, 699
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 577
CviAII CATG 8 cut(s) 134, 226, 459, 465, 638, 664, 700, 729
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 4 cut(s) 53, 197, 207, 395
DpnI GATC 4 cut(s) 92, 162, 681, 707
DpnII GATC 4 cut(s) 90, 160, 679, 705
DriI GACNNNNNGTC 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 434
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 399
Eco72I CACGTG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 371
EcoRV GATATC 1 cut(s) 204
EcoT22I ATGCAT 2 cut(s) 730, 742
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 8 cut(s) 137, 229, 462, 468, 641, 667, 703, 732
FaqI GGGAC 2 cut(s) 441, 637
FatI CATG 8 cut(s) 133, 225, 458, 464, 637, 663, 699, 728
FauNDI CATATG 2 cut(s) 154, 724
FokI GGATG 3 cut(s) 84, 234, 500
FriOI GRGCYC 1 cut(s) 373
FspBI CTAG 1 cut(s) 606
HaeIII GGCC 3 cut(s) 463, 534, 809
HapII CCGG 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 8 cut(s) 137, 229, 462, 468, 641, 667, 703, 732
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 22, 65, 696
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 111, 208, 240, 693
Hpy188III TCNNGA 6 cut(s) 134, 251, 426, 638, 677, 700
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 662
HpyCH4III ACNGT 2 cut(s) 17, 85
HpyCH4IV ACGT 6 cut(s) 46, 138, 166, 341, 449, 768
HpyCH4V TGCA 8 cut(s) 62, 158, 247, 339, 468, 728, 740, 750
HpyF3I CTNAG 4 cut(s) 53, 197, 207, 395
HpySE526I ACGT 6 cut(s) 46, 138, 166, 341, 449, 768
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 8 cut(s) 137, 229, 462, 468, 641, 667, 703, 732
Kzo9I GATC 4 cut(s) 90, 160, 679, 705
LmnI GCTCC 2 cut(s) 13, 616
LpnPI CCDG 5 cut(s) 264, 299, 516, 662, 823
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 606
MaeII ACGT 6 cut(s) 46, 138, 166, 341, 449, 768
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 92, 162, 681, 707
MboI GATC 4 cut(s) 90, 160, 679, 705
MboII GAAGA 6 cut(s) 21, 314, 317, 317, 451, 715
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 3 cut(s) 334, 386, 505
MluNI TGGCCA 1 cut(s) 463
MlyI GAGTC 2 cut(s) 59, 690
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 6 cut(s) 124, 222, 429, 640, 665, 799
Mox20I TGGCCA 1 cut(s) 463
Mph1103I ATGCAT 2 cut(s) 730, 742
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 463
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 3 cut(s) 463, 727, 745
Msp20I TGGCCA 1 cut(s) 463
MspI CCGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 198
NdeI CATATG 2 cut(s) 154, 724
NdeII GATC 4 cut(s) 90, 160, 679, 705
NlaIII CATG 8 cut(s) 137, 229, 462, 468, 641, 667, 703, 732
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 2 cut(s) 730, 742
NspI RCATGY 2 cut(s) 667, 732
PaeR7I CTCGAG 1 cut(s) 366
PagI TCATGA 3 cut(s) 133, 637, 699
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 18
PleI GAGTC 2 cut(s) 59, 690
PmaCI CACGTG 1 cut(s) 342
PmlI CACGTG 1 cut(s) 342
PpsI GAGTC 2 cut(s) 59, 690
Ppu21I YACGTR 1 cut(s) 342
PscI ACATGT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 373
PspCI CACGTG 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 366
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 3 cut(s) 463, 727, 745
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 672
Sau3AI GATC 4 cut(s) 90, 160, 679, 705
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 2 cut(s) 59, 690
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 3 cut(s) 463, 727, 745
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 3 cut(s) 334, 386, 505
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 1 cut(s) 373
TaaI ACNGT 2 cut(s) 17, 85
TaiI ACGT 6 cut(s) 49, 141, 169, 344, 452, 771
TaqI TCGA 8 cut(s) 89, 127, 190, 277, 347, 367, 657, 777
TaqII GACCGA 1 cut(s) 263
TasI AATT 3 cut(s) 334, 386, 505
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 5 cut(s) 122, 231, 626, 711, 716
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 111
XceI RCATGY 2 cut(s) 667, 732
XhoI CTCGAG 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 606
ZraI GACGTC 1 cut(s) 450
Zsp2I ATGCAT 2 cut(s) 730, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.