Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015527

Physical Location & Seq

Genomic Coordinates Reverse (-)

47732529 .. 47734201

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATTGATATTAGGTGGTCGAATTCATTGAAAATGGCTCGAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATTATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTACCCATTACTTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

159

Amino Acids

18.04

Weight (kDa)

9.11

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27954
malus_domestica	MD00G1096100.v1.1
prunus_persica	Prupe.4G287800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496761
rosa_laevigata	RLG00000022458 RLG00000022506
rosa_multiflora	Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii	Rroxscaffold_6G00388030
rosa_rugosa	Rorug03G0286800
rosa_samantha	Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana	Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	22, 305, 347
AfaI	GTAC	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	31, 59, 311
AluBI	AGCT	4 cut(s)	44, 55, 177, 220
AluI	AGCT	4 cut(s)	44, 55, 177, 220
Alw21I	GWGCWC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	72, 454
ApoI	RAATTY	3 cut(s)	22, 305, 347
Asp718I	GGTACC	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	84, 466
BccI	CCATC	2 cut(s)	140, 194
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	73, 455
BlsI	GCNGC	2 cut(s)	74, 456
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	373, 462
BmrFI	CCNGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	84, 466
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	89, 130, 319
BspLI	GGNNCC	2 cut(s)	373, 462
BspMI	ACCTGC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	89, 130, 319
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	3 cut(s)	92, 133, 322
BstMBI	GATC	3 cut(s)	89, 130, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	84, 466
BstV2I	GAAGAC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	2 cut(s)	352, 381
CviJI	RGCY	8 cut(s)	38, 44, 55, 67, 177, 220, 240, 316
CviKI_1	RGCY	8 cut(s)	38, 44, 55, 67, 177, 220, 240, 316
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	91, 132, 321
DpnII	GATC	3 cut(s)	89, 130, 319
DraI	TTTAAA	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	355, 384
FaiI	YATR	5 cut(s)	144, 353, 382, 395, 443
FatI	CATG	2 cut(s)	351, 380
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	73, 455
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	73, 455
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	73, 455
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	2 cut(s)	355, 384
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	180, 323
HpyAV	CCTTC	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	355, 380, 402, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	355, 384
HspAI	GCGC	1 cut(s)	384
KpnI	GGTACC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	89, 130, 319
LpnPI	CCDG	4 cut(s)	257, 308, 438, 443
Lsp1109I	GCAGC	2 cut(s)	84, 466
MaeI	CTAG	1 cut(s)	192
MalI	GATC	3 cut(s)	91, 132, 321
MboI	GATC	3 cut(s)	89, 130, 319
MboII	GAAGA	2 cut(s)	128, 217
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	7 cut(s)	22, 59, 119, 158, 166, 305, 347
MnlI	CCTC	1 cut(s)	99
MseI	TTAA	3 cut(s)	122, 212, 478
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	89, 130, 319
NlaIII	CATG	2 cut(s)	355, 384
NlaIV	GGNNCC	2 cut(s)	373, 462
NspI	RCATGY	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	74, 456
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	373, 462
PspXI	VCTCGAGB	1 cut(s)	39
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	122, 212, 478
SatI	GCNGC	2 cut(s)	73, 455
Sau3AI	GATC	3 cut(s)	89, 130, 319
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	17, 46, 57, 166, 179, 222, 277, 367, 462
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	7 cut(s)	22, 59, 119, 158, 166, 305, 347
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	243
TaqI	TCGA	4 cut(s)	20, 40, 83, 133
TasI	AATT	7 cut(s)	22, 59, 119, 158, 166, 305, 347
Tru1I	TTAA	3 cut(s)	122, 212, 478
Tru9I	TTAA	3 cut(s)	122, 212, 478
TseI	GCWGC	2 cut(s)	72, 454
TspDTI	ATGAA	2 cut(s)	15, 340
TspGWI	ACGGA	1 cut(s)	111
XapI	RAATTY	3 cut(s)	22, 305, 347
XceI	RCATGY	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.