Rw0G004010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00154
OG0015527
Physical Location & Seq
Reverse (-)
23538 .. 24116
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004010.1

Sequence Viewer

Length: 579 bp
ATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATTATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGTGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCGACAGAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

192

Amino Acids

22.05

Weight (kDa)

8.18

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 24 - 146 6e-06 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AcsI RAATTY 3 cut(s) 221, 263, 500
AgsI TTSAA 2 cut(s) 227, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 4 cut(s) 93, 136, 478, 511
AluI AGCT 4 cut(s) 93, 136, 478, 511
Alw21I GWGCWC 1 cut(s) 480
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 3 cut(s) 221, 263, 500
AspLEI GCGC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 208
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 56, 110
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 341
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 2 cut(s) 160, 524
BsmI GAATGC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 3 cut(s) 5, 46, 235
BspLI GGNNCC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 364
BsrI ACTGG 1 cut(s) 341
BssMI GATC 3 cut(s) 5, 46, 235
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 176, 512
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 3 cut(s) 8, 49, 238
BstMBI GATC 3 cut(s) 5, 46, 235
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 461
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 302
CviAII CATG 4 cut(s) 268, 297, 380, 412
CviJI RGCY 7 cut(s) 93, 136, 156, 232, 478, 511, 556
CviKI_1 RGCY 7 cut(s) 93, 136, 156, 232, 478, 511, 556
DdeI CTNAG 2 cut(s) 176, 512
DpnI GATC 3 cut(s) 7, 48, 237
DpnII GATC 3 cut(s) 5, 46, 235
DraI TTTAAA 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 4 cut(s) 271, 300, 383, 415
FatI CATG 4 cut(s) 267, 296, 379, 411
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 371
HapII CCGG 2 cut(s) 160, 524
HhaI GCGC 1 cut(s) 302
Hin1II CATG 4 cut(s) 271, 300, 383, 415
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 134, 509
HinfI GANTC 3 cut(s) 485, 527, 560
HpaII CCGG 2 cut(s) 160, 524
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 261, 475
Hpy188III TCNNGA 2 cut(s) 96, 239
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 5 cut(s) 271, 296, 318, 370, 498
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 176, 512
Hsp92II CATG 4 cut(s) 271, 300, 383, 415
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 5, 46, 235
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 5 cut(s) 173, 224, 354, 359, 537
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 1 cut(s) 108
MalI GATC 3 cut(s) 7, 48, 237
MboI GATC 3 cut(s) 5, 46, 235
MboII GAAGA 4 cut(s) 44, 133, 428, 437
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 8 cut(s) 35, 74, 82, 221, 263, 391, 500, 518
MlyI GAGTC 2 cut(s) 479, 521
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 3 cut(s) 15, 378, 546
MseI TTAA 2 cut(s) 38, 128
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 2 cut(s) 160, 524
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 161
NdeII GATC 3 cut(s) 5, 46, 235
NlaIII CATG 4 cut(s) 271, 300, 383, 415
NlaIV GGNNCC 1 cut(s) 289
NspI RCATGY 1 cut(s) 300
PaeI GCATGC 1 cut(s) 300
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 2 cut(s) 479, 521
PpsI GAGTC 2 cut(s) 479, 521
Psp124BI GAGCTC 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 454
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 38, 128
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 3 cut(s) 5, 46, 235
SchI GAGTC 2 cut(s) 479, 521
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 480
SetI ASST 8 cut(s) 82, 95, 138, 193, 283, 378, 480, 513
SmiMI CAYNNNNRTG 1 cut(s) 454
SphI GCATGC 1 cut(s) 300
Sse9I AATT 8 cut(s) 35, 74, 82, 221, 263, 391, 500, 518
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 49
TasI AATT 8 cut(s) 35, 74, 82, 221, 263, 391, 500, 518
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 2 cut(s) 38, 128
Tru9I TTAA 2 cut(s) 38, 128
TscAI CASTG 1 cut(s) 461
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 256, 368, 507
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 461
XapI RAATTY 3 cut(s) 221, 263, 500
XceI RCATGY 1 cut(s) 300
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.