Rh3BG367800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015527
Physical Location & Seq
Reverse (-)
45816156 .. 45817250
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG367800.1

Sequence Viewer

Length: 819 bp
ATGCTTAGGATTTCCCATAAAGATGAAGAACATGTAAAAGAGTATCATAGAAAGCTCTTCCAGCTCAAGGACAAGGACAACGACGACCATTACAAAGTCGGTTCTGGTAGAATGTTTCGTTCTCCTTCTCTCTTTGAAGACCTTGTCAAATGCCTTCTGTTATGTAACTGCAAGTGGTCGAATTCATTGAAAATGGCTCAAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGCGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATAATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAAGACTTGATGAATTTGAAGGGCTTGAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCAACAAAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

272

Amino Acids

31.53

Weight (kDa)

8.26

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AcsI RAATTY 4 cut(s) 181, 464, 503, 740
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 5 cut(s) 137, 190, 218, 470, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AluBI AGCT 8 cut(s) 55, 64, 203, 214, 336, 379, 718, 751
AluI AGCT 8 cut(s) 55, 64, 203, 214, 336, 379, 718, 751
Alw21I GWGCWC 1 cut(s) 720
ApeKI GCWGC 2 cut(s) 231, 610
ApoI RAATTY 4 cut(s) 181, 464, 503, 740
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AspLEI GCGC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 404
BanII GRGCYC 1 cut(s) 720
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 144, 371
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 243, 622
BccI CCATC 2 cut(s) 299, 353
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BcnI CCSGG 1 cut(s) 404
BfaI CTAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 2 cut(s) 232, 611
BlsI GCNGC 2 cut(s) 233, 612
Bme1390I CCNGG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 144, 371
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 3 cut(s) 50, 183, 497
BpuMI CCSGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 241
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 243, 622
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 2 cut(s) 403, 764
BslI CCNNNNNNNGG 1 cut(s) 67
BsmI GAATGC 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 2 cut(s) 248, 289
BspLI GGNNCC 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 581
BssMI GATC 2 cut(s) 248, 289
BssSI CACGAG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 5, 419, 752
BstF5I GGATG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 2 cut(s) 251, 292
BstMBI GATC 2 cut(s) 248, 289
BstMWI GCNNNNNNNGC 2 cut(s) 61, 610
BstNSI RCATGY 2 cut(s) 35, 540
BstSCI CCNGG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 243, 622
BstV2I GAAGAC 2 cut(s) 144, 371
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 701
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 538
CfoI GCGC 1 cut(s) 542
CviAII CATG 5 cut(s) 32, 508, 537, 620, 652
DdeI CTNAG 3 cut(s) 5, 419, 752
DpnI GATC 2 cut(s) 250, 291
DpnII GATC 2 cut(s) 248, 289
DraI TTTAAA 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 718
EcoRI GAATTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 720
FaeI CATG 5 cut(s) 35, 511, 540, 623, 655
FatI CATG 5 cut(s) 31, 507, 536, 619, 651
Fnu4HI GCNGC 2 cut(s) 232, 611
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 2 cut(s) 232, 611
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 541
GluI GCNGC 2 cut(s) 232, 611
HapII CCGG 2 cut(s) 403, 764
HhaI GCGC 1 cut(s) 542
Hin1II CATG 5 cut(s) 35, 511, 540, 623, 655
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HindIII AAGCTT 2 cut(s) 377, 749
HinfI GANTC 3 cut(s) 725, 767, 800
HpaII CCGG 2 cut(s) 403, 764
Hpy188I TCNGA 2 cut(s) 501, 715
Hpy188III TCNNGA 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 135, 164, 464
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4V TGCA 7 cut(s) 171, 511, 536, 558, 610, 636, 738
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 610
HpyF3I CTNAG 3 cut(s) 5, 419, 752
Hsp92II CATG 5 cut(s) 35, 511, 540, 623, 655
HspAI GCGC 1 cut(s) 540
Kzo9I GATC 2 cut(s) 248, 289
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 715
LpnPI CCDG 6 cut(s) 74, 90, 416, 594, 599, 777
Lsp1109I GCAGC 2 cut(s) 243, 622
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 250, 291
MboI GATC 2 cut(s) 248, 289
MboII GAAGA 7 cut(s) 38, 49, 149, 287, 376, 668, 677
MhlI GDGCHC 1 cut(s) 720
MlyI GAGTC 2 cut(s) 719, 761
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 4 cut(s) 258, 472, 618, 786
MseI TTAA 2 cut(s) 281, 371
MslI CAYNNNNRTG 2 cut(s) 21, 694
MspI CCGG 2 cut(s) 403, 764
MspR9I CCNGG 1 cut(s) 404
Mva1269I GAATGC 1 cut(s) 740
MwoI GCNNNNNNNGC 2 cut(s) 61, 610
NciI CCSGG 1 cut(s) 404
NdeII GATC 2 cut(s) 248, 289
NlaIII CATG 5 cut(s) 35, 511, 540, 623, 655
NlaIV GGNNCC 1 cut(s) 529
NspI RCATGY 2 cut(s) 35, 540
PaeI GCATGC 1 cut(s) 540
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 800
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 233, 612
PleI GAGTC 2 cut(s) 719, 761
PpsI GAGTC 2 cut(s) 719, 761
PscI ACATGT 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 21, 694
SacI GAGCTC 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 281, 371
SatI GCNGC 2 cut(s) 232, 611
Sau3AI GATC 2 cut(s) 248, 289
SchI GAGTC 2 cut(s) 719, 761
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 21, 694
SmlI CTYRAG 3 cut(s) 65, 198, 476
SmoI CTYRAG 3 cut(s) 65, 198, 476
SphI GCATGC 1 cut(s) 540
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 351
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 649
TaqI TCGA 3 cut(s) 179, 242, 292
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 281, 371
Tru9I TTAA 2 cut(s) 281, 371
TscAI CASTG 1 cut(s) 701
TseI GCWGC 2 cut(s) 231, 610
TspDTI ATGAA 6 cut(s) 39, 174, 477, 496, 608, 747
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 701
Tth111I GACNNNGTC 1 cut(s) 143
XapI RAATTY 4 cut(s) 181, 464, 503, 740
XceI RCATGY 2 cut(s) 35, 540
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.